Results 21 - 40 of 115 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24920 | 5' | -48.7 | NC_005284.1 | + | 16769 | 0.66 | 0.971733 |
Target: 5'- gGACGUCAGCGGcACGccgacgcCGGCc- -3' miRNA: 3'- gCUGUAGUUGCCuUGCuaaa---GCCGcg -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 6050 | 0.66 | 0.971733 |
Target: 5'- -cGCAUCGuuCGcGACGAUcggaUCGGCGCc -3' miRNA: 3'- gcUGUAGUu-GCcUUGCUAa---AGCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 29914 | 0.66 | 0.974724 |
Target: 5'- uGAcCGUCGACGGuugcccauGCaGUUcagugcacUCGGCGCa -3' miRNA: 3'- gCU-GUAGUUGCCu-------UGcUAA--------AGCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 53020 | 0.66 | 0.977477 |
Target: 5'- -uGCGUCGA-GGAAagccauCGGcUUCGGCGCc -3' miRNA: 3'- gcUGUAGUUgCCUU------GCUaAAGCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 35724 | 0.66 | 0.978515 |
Target: 5'- aCGGCAUCGugaaccugacgcaguACGcauuCGAgcuugUCGGCGCu -3' miRNA: 3'- -GCUGUAGU---------------UGCcuu-GCUaa---AGCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 47733 | 0.67 | 0.952916 |
Target: 5'- aGGCcgugcUCGGCGGuACGg---CGGCGCg -3' miRNA: 3'- gCUGu----AGUUGCCuUGCuaaaGCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 47076 | 0.67 | 0.961246 |
Target: 5'- uCGACGUCuACGGGGCa---UCGG-GCa -3' miRNA: 3'- -GCUGUAGuUGCCUUGcuaaAGCCgCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 18377 | 0.67 | 0.957219 |
Target: 5'- aCGuCGUCGaaugGCGGAAgGAUaaCGGCGa -3' miRNA: 3'- -GCuGUAGU----UGCCUUgCUAaaGCCGCg -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 38389 | 0.67 | 0.952916 |
Target: 5'- aCGACGUCAAauuGAucaACGAUcUUCGGCugGCg -3' miRNA: 3'- -GCUGUAGUUgc-CU---UGCUA-AAGCCG--CG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 45618 | 0.67 | 0.957219 |
Target: 5'- gGACGagGGCGGuGCGAgucuucgCGGgGCa -3' miRNA: 3'- gCUGUagUUGCCuUGCUaaa----GCCgCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 46275 | 0.67 | 0.957219 |
Target: 5'- cCGAUGUCGGCGGAAgcca-UCaGCGCa -3' miRNA: 3'- -GCUGUAGUUGCCUUgcuaaAGcCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 7691 | 0.67 | 0.961246 |
Target: 5'- nGACGUaCAGCGu-GCGcgUgagCGGUGCg -3' miRNA: 3'- gCUGUA-GUUGCcuUGCuaAa--GCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 22859 | 0.67 | 0.965002 |
Target: 5'- aCGAUAggCGGCGGGAaGGgcgUCGaGCGCc -3' miRNA: 3'- -GCUGUa-GUUGCCUUgCUaa-AGC-CGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 25254 | 0.67 | 0.965002 |
Target: 5'- aUGACGcCAAUGaaaguccgcuccGAGCGGUUUCugaGGCGCu -3' miRNA: 3'- -GCUGUaGUUGC------------CUUGCUAAAG---CCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 12071 | 0.67 | 0.965002 |
Target: 5'- gCGAUGUCucagguguuCGGAGCGA--UCGGCu- -3' miRNA: 3'- -GCUGUAGuu-------GCCUUGCUaaAGCCGcg -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 1363 | 0.67 | 0.968157 |
Target: 5'- gGACgAUCGACgaagGGGACGAUUggaccgaUCcGCGCg -3' miRNA: 3'- gCUG-UAGUUG----CCUUGCUAA-------AGcCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 19697 | 0.67 | 0.968495 |
Target: 5'- gCGGgAUUAuggauuUGGGACGGag-CGGCGCg -3' miRNA: 3'- -GCUgUAGUu-----GCCUUGCUaaaGCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 14064 | 0.67 | 0.968495 |
Target: 5'- uGGCGUCAuCGcGAACGAg--UGGUGg -3' miRNA: 3'- gCUGUAGUuGC-CUUGCUaaaGCCGCg -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 15601 | 0.67 | 0.968495 |
Target: 5'- uCGGCcgCGACGuGACGuugcaggUCGGCGa -3' miRNA: 3'- -GCUGuaGUUGCcUUGCuaa----AGCCGCg -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 47795 | 0.67 | 0.968495 |
Target: 5'- gCGGaggCGACGG-GCGAgcgcuuggCGGCGCu -3' miRNA: 3'- -GCUguaGUUGCCuUGCUaaa-----GCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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