miRNA display CGI


Results 41 - 60 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24920 5' -48.7 NC_005284.1 + 50890 0.67 0.968495
Target:  5'- aCGGCcAUCGcacucCGGAugcGCGA--UCGGUGCa -3'
miRNA:   3'- -GCUG-UAGUu----GCCU---UGCUaaAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 21729 0.67 0.965002
Target:  5'- gCGGCAUCGuGCGcGGCGAUcgcacgcugcUCGGCGUc -3'
miRNA:   3'- -GCUGUAGU-UGCcUUGCUAa---------AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 7691 0.67 0.961246
Target:  5'- nGACGUaCAGCGu-GCGcgUgagCGGUGCg -3'
miRNA:   3'- gCUGUA-GUUGCcuUGCuaAa--GCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 45153 0.68 0.948331
Target:  5'- gCGugGUCGACGcacGGCGAcgUCGG-GCa -3'
miRNA:   3'- -GCugUAGUUGCc--UUGCUaaAGCCgCG- -5'
24920 5' -48.7 NC_005284.1 + 14380 0.68 0.927096
Target:  5'- uCGAgGUCGACuGcACGGaaaUCGGCGCc -3'
miRNA:   3'- -GCUgUAGUUGcCuUGCUaa-AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 7967 0.68 0.927096
Target:  5'- aCGACGaaaCGGCGGuucCGAgaagUUCGcGCGCg -3'
miRNA:   3'- -GCUGUa--GUUGCCuu-GCUa---AAGC-CGCG- -5'
24920 5' -48.7 NC_005284.1 + 13010 0.68 0.94346
Target:  5'- gCGcACAUCAAgacGAACGAgaaUUUCGGUGUa -3'
miRNA:   3'- -GC-UGUAGUUgc-CUUGCU---AAAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 18022 0.68 0.938299
Target:  5'- -aGCgAUCGcCGGcGGCGAUUgUCGGCGCc -3'
miRNA:   3'- gcUG-UAGUuGCC-UUGCUAA-AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 53094 0.68 0.927096
Target:  5'- uGACGUCAugGGcAAauc---CGGCGCg -3'
miRNA:   3'- gCUGUAGUugCC-UUgcuaaaGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 4631 0.68 0.932845
Target:  5'- gCGACGgucggCAGCGGcgUGAg--CGGCaGCa -3'
miRNA:   3'- -GCUGUa----GUUGCCuuGCUaaaGCCG-CG- -5'
24920 5' -48.7 NC_005284.1 + 22518 0.68 0.94346
Target:  5'- aGACGUUcggAACGGcGACGAcuaCGGUGCc -3'
miRNA:   3'- gCUGUAG---UUGCC-UUGCUaaaGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 11611 0.68 0.94346
Target:  5'- cCGAgCGUCAGCGuGAcgugcagcGCGAacUCGGgGCg -3'
miRNA:   3'- -GCU-GUAGUUGC-CU--------UGCUaaAGCCgCG- -5'
24920 5' -48.7 NC_005284.1 + 12110 0.68 0.94346
Target:  5'- gGAU-UCGGCGGugucucUGAUgccgUCGGCGCg -3'
miRNA:   3'- gCUGuAGUUGCCuu----GCUAa---AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 46506 0.68 0.94346
Target:  5'- cCGACGcCGcACGGGACGGa--UGGUGCg -3'
miRNA:   3'- -GCUGUaGU-UGCCUUGCUaaaGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 3419 0.68 0.948331
Target:  5'- uGGCAaugCAGCGGuguuGACGGUUcagUCGGCa- -3'
miRNA:   3'- gCUGUa--GUUGCC----UUGCUAA---AGCCGcg -5'
24920 5' -48.7 NC_005284.1 + 15837 0.68 0.948331
Target:  5'- aCGGCAcgcUCGGCGu-GCG-UUUCGGaCGCa -3'
miRNA:   3'- -GCUGU---AGUUGCcuUGCuAAAGCC-GCG- -5'
24920 5' -48.7 NC_005284.1 + 16161 0.68 0.948331
Target:  5'- -cACAUC-GCuGAugGGgcUCGGCGCg -3'
miRNA:   3'- gcUGUAGuUGcCUugCUaaAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 22896 0.68 0.948331
Target:  5'- uGAuCAUUuucaguUGGGACGAUg-CGGCGCa -3'
miRNA:   3'- gCU-GUAGuu----GCCUUGCUAaaGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 26334 0.68 0.932845
Target:  5'- gGACAuucuUCAgcGCGGcACGGUcaacgcCGGCGCg -3'
miRNA:   3'- gCUGU----AGU--UGCCuUGCUAaa----GCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 12042 0.68 0.948331
Target:  5'- cCGACcUCGcGCGGu----UUUCGGCGCg -3'
miRNA:   3'- -GCUGuAGU-UGCCuugcuAAAGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.