miRNA display CGI


Results 61 - 80 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24920 5' -48.7 NC_005284.1 + 15837 0.68 0.948331
Target:  5'- aCGGCAcgcUCGGCGu-GCG-UUUCGGaCGCa -3'
miRNA:   3'- -GCUGU---AGUUGCcuUGCuAAAGCC-GCG- -5'
24920 5' -48.7 NC_005284.1 + 16161 0.68 0.948331
Target:  5'- -cACAUC-GCuGAugGGgcUCGGCGCg -3'
miRNA:   3'- gcUGUAGuUGcCUugCUaaAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 12110 0.68 0.94346
Target:  5'- gGAU-UCGGCGGugucucUGAUgccgUCGGCGCg -3'
miRNA:   3'- gCUGuAGUUGCCuu----GCUAa---AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 11611 0.68 0.94346
Target:  5'- cCGAgCGUCAGCGuGAcgugcagcGCGAacUCGGgGCg -3'
miRNA:   3'- -GCU-GUAGUUGC-CU--------UGCUaaAGCCgCG- -5'
24920 5' -48.7 NC_005284.1 + 22518 0.68 0.94346
Target:  5'- aGACGUUcggAACGGcGACGAcuaCGGUGCc -3'
miRNA:   3'- gCUGUAG---UUGCC-UUGCUaaaGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 9986 0.69 0.921054
Target:  5'- -uGCGcgAGCGcGAGCGAcgcUUCGGCGCg -3'
miRNA:   3'- gcUGUagUUGC-CUUGCUa--AAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 29842 0.69 0.919184
Target:  5'- gGGCAaccgUCGACGGucAagccgacgcaucucGCGAUggUCGGCGCc -3'
miRNA:   3'- gCUGU----AGUUGCC--U--------------UGCUAa-AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 41135 0.69 0.921054
Target:  5'- aGGCAcgCGGCGccccGCGAgaaacgUCGGCGCg -3'
miRNA:   3'- gCUGUa-GUUGCcu--UGCUaa----AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 37795 0.69 0.914717
Target:  5'- gCGGCcuuUCGGCGGGGCGGcccgUauGCGCg -3'
miRNA:   3'- -GCUGu--AGUUGCCUUGCUaa--AgcCGCG- -5'
24920 5' -48.7 NC_005284.1 + 16064 0.69 0.914717
Target:  5'- uCGGCAguaagcGCGGGgggcucuucaacACGAUUcUCGGCGCc -3'
miRNA:   3'- -GCUGUagu---UGCCU------------UGCUAA-AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 25641 0.69 0.901168
Target:  5'- uGACGUUccuAUGGAguaACGGgaaggCGGCGCa -3'
miRNA:   3'- gCUGUAGu--UGCCU---UGCUaaa--GCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 46737 0.69 0.921054
Target:  5'- -aACAgCAAuCGGAcuACGAagUCGGCGCc -3'
miRNA:   3'- gcUGUaGUU-GCCU--UGCUaaAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 49584 0.69 0.914717
Target:  5'- aGACGUCgGGCuGAucaGCGGUcUUCGGCGUc -3'
miRNA:   3'- gCUGUAG-UUGcCU---UGCUA-AAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 51467 0.69 0.908088
Target:  5'- gGACGUCgAGCGauGGGCGGUgaUCGcGCGCu -3'
miRNA:   3'- gCUGUAG-UUGC--CUUGCUAa-AGC-CGCG- -5'
24920 5' -48.7 NC_005284.1 + 9491 0.69 0.908088
Target:  5'- gCGACGcaGGCGGcgacAGCGugggUCGGCGCc -3'
miRNA:   3'- -GCUGUagUUGCC----UUGCuaa-AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 19290 0.7 0.891745
Target:  5'- aCGAcCGUCGACGGAcgcaaguacauggcAuCGA--UCGGCGUg -3'
miRNA:   3'- -GCU-GUAGUUGCCU--------------U-GCUaaAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 14156 0.7 0.893962
Target:  5'- aCGACGagAGCGGcAAgGAgauUUUCGGCGa -3'
miRNA:   3'- -GCUGUagUUGCC-UUgCU---AAAGCCGCg -5'
24920 5' -48.7 NC_005284.1 + 48862 0.7 0.893962
Target:  5'- aGGCGaaagCGGCGGAGaag--UCGGCGCc -3'
miRNA:   3'- gCUGUa---GUUGCCUUgcuaaAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 45205 0.7 0.886474
Target:  5'- aCGGCcguGUCgAACGGcACGAgaUCGaGCGCg -3'
miRNA:   3'- -GCUG---UAG-UUGCCuUGCUaaAGC-CGCG- -5'
24920 5' -48.7 NC_005284.1 + 10435 0.7 0.893962
Target:  5'- uCGGCAUau-CGGAauuuggcgacGCGGg--CGGCGCa -3'
miRNA:   3'- -GCUGUAguuGCCU----------UGCUaaaGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.