miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24920 5' -48.7 NC_005284.1 + 14548 1.13 0.003117
Target:  5'- gCGACAUCAACGGAACGAUUUCGGCGCu -3'
miRNA:   3'- -GCUGUAGUUGCCUUGCUAAAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 19024 0.86 0.162892
Target:  5'- cCGGcCAUCGGCGGggUGAUUaggucgaUCGGCGCg -3'
miRNA:   3'- -GCU-GUAGUUGCCuuGCUAA-------AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 21880 0.82 0.289033
Target:  5'- aGACGUCGacgcagcgguuGCGGAACGcguUUUCGGCGUc -3'
miRNA:   3'- gCUGUAGU-----------UGCCUUGCu--AAAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 19393 0.81 0.328395
Target:  5'- cCGugAUCGACGaGGGCGGUgcaggcgugaUCGGCGCg -3'
miRNA:   3'- -GCugUAGUUGC-CUUGCUAa---------AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 18571 0.78 0.468805
Target:  5'- uCGACGUCAcGCcGAGCGcgUucUCGGCGCg -3'
miRNA:   3'- -GCUGUAGU-UGcCUUGCuaA--AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 14704 0.77 0.54401
Target:  5'- aCGGCGUCGA-GGuagcgcGCGAgcgUUCGGCGCc -3'
miRNA:   3'- -GCUGUAGUUgCCu-----UGCUa--AAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 30882 0.77 0.5112
Target:  5'- aCGACcgCGAuCGGGACGAUccggacuaucgUCGGUGCg -3'
miRNA:   3'- -GCUGuaGUU-GCCUUGCUAa----------AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 7663 0.77 0.53299
Target:  5'- gCGGCgucgGUCAAUGGGcUGAUUUCGGCGa -3'
miRNA:   3'- -GCUG----UAGUUGCCUuGCUAAAGCCGCg -5'
24920 5' -48.7 NC_005284.1 + 35228 0.76 0.588741
Target:  5'- aCGGCAUaCAACGGAGcCGAccg-GGCGCa -3'
miRNA:   3'- -GCUGUA-GUUGCCUU-GCUaaagCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 11711 0.75 0.606839
Target:  5'- uCGcCGUCGACGGGACGAacugacgaagGGCGCg -3'
miRNA:   3'- -GCuGUAGUUGCCUUGCUaaag------CCGCG- -5'
24920 5' -48.7 NC_005284.1 + 7798 0.74 0.701804
Target:  5'- cCGcCggCGGCGGcACGAgcUUCGGCGCa -3'
miRNA:   3'- -GCuGuaGUUGCCuUGCUa-AAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 45396 0.74 0.679391
Target:  5'- uGugAUCGGCGuGACGAUaa-GGCGCa -3'
miRNA:   3'- gCugUAGUUGCcUUGCUAaagCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 16182 0.73 0.73485
Target:  5'- -cGCGcCAACGGcAACGAgugCGGCGCc -3'
miRNA:   3'- gcUGUaGUUGCC-UUGCUaaaGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 17698 0.73 0.73485
Target:  5'- uGGCGUCAucaagACGGAggucACGGcgUUCGGCuGCa -3'
miRNA:   3'- gCUGUAGU-----UGCCU----UGCUa-AAGCCG-CG- -5'
24920 5' -48.7 NC_005284.1 + 921 0.73 0.712908
Target:  5'- uGGCAUCGGCauguucgugcuGGAcgACGAgUUCGGUGCc -3'
miRNA:   3'- gCUGUAGUUG-----------CCU--UGCUaAAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 1684 0.73 0.73485
Target:  5'- aCGACAUCGACGG-GCGg---CGGCa- -3'
miRNA:   3'- -GCUGUAGUUGCCuUGCuaaaGCCGcg -5'
24920 5' -48.7 NC_005284.1 + 1759 0.73 0.745662
Target:  5'- cCGAaaacCGUCGuaugGCGGAGCGAUaUCaGGCGUg -3'
miRNA:   3'- -GCU----GUAGU----UGCCUUGCUAaAG-CCGCG- -5'
24920 5' -48.7 NC_005284.1 + 51672 0.73 0.743509
Target:  5'- gCGACgAUCAGCuuucgcgaucucGAGCGcaGUUUCGGCGCg -3'
miRNA:   3'- -GCUG-UAGUUGc-----------CUUGC--UAAAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 37448 0.72 0.807525
Target:  5'- cCGGCcgCGA-GGAACaucgUCGGCGCg -3'
miRNA:   3'- -GCUGuaGUUgCCUUGcuaaAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 52914 0.72 0.797635
Target:  5'- aCGACAUCAcguGGAACGGcag-GGCGCc -3'
miRNA:   3'- -GCUGUAGUug-CCUUGCUaaagCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.