Results 61 - 80 of 115 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24920 | 5' | -48.7 | NC_005284.1 | + | 13010 | 0.68 | 0.94346 |
Target: 5'- gCGcACAUCAAgacGAACGAgaaUUUCGGUGUa -3' miRNA: 3'- -GC-UGUAGUUgc-CUUGCU---AAAGCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 15837 | 0.68 | 0.948331 |
Target: 5'- aCGGCAcgcUCGGCGu-GCG-UUUCGGaCGCa -3' miRNA: 3'- -GCUGU---AGUUGCcuUGCuAAAGCC-GCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 16161 | 0.68 | 0.948331 |
Target: 5'- -cACAUC-GCuGAugGGgcUCGGCGCg -3' miRNA: 3'- gcUGUAGuUGcCUugCUaaAGCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 22896 | 0.68 | 0.948331 |
Target: 5'- uGAuCAUUuucaguUGGGACGAUg-CGGCGCa -3' miRNA: 3'- gCU-GUAGuu----GCCUUGCUAaaGCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 45153 | 0.68 | 0.948331 |
Target: 5'- gCGugGUCGACGcacGGCGAcgUCGG-GCa -3' miRNA: 3'- -GCugUAGUUGCc--UUGCUaaAGCCgCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 12042 | 0.68 | 0.948331 |
Target: 5'- cCGACcUCGcGCGGu----UUUCGGCGCg -3' miRNA: 3'- -GCUGuAGU-UGCCuugcuAAAGCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 3419 | 0.68 | 0.948331 |
Target: 5'- uGGCAaugCAGCGGuguuGACGGUUcagUCGGCa- -3' miRNA: 3'- gCUGUa--GUUGCC----UUGCUAA---AGCCGcg -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 46506 | 0.68 | 0.94346 |
Target: 5'- cCGACGcCGcACGGGACGGa--UGGUGCg -3' miRNA: 3'- -GCUGUaGU-UGCCUUGCUaaaGCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 12110 | 0.68 | 0.94346 |
Target: 5'- gGAU-UCGGCGGugucucUGAUgccgUCGGCGCg -3' miRNA: 3'- gCUGuAGUUGCCuu----GCUAa---AGCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 11611 | 0.68 | 0.94346 |
Target: 5'- cCGAgCGUCAGCGuGAcgugcagcGCGAacUCGGgGCg -3' miRNA: 3'- -GCU-GUAGUUGC-CU--------UGCUaaAGCCgCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 22518 | 0.68 | 0.94346 |
Target: 5'- aGACGUUcggAACGGcGACGAcuaCGGUGCc -3' miRNA: 3'- gCUGUAG---UUGCC-UUGCUaaaGCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 32783 | 0.68 | 0.927096 |
Target: 5'- gGACugcgCGACGGAaaaGCGc--UUGGCGCu -3' miRNA: 3'- gCUGua--GUUGCCU---UGCuaaAGCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 47795 | 0.67 | 0.968495 |
Target: 5'- gCGGaggCGACGG-GCGAgcgcuuggCGGCGCu -3' miRNA: 3'- -GCUguaGUUGCCuUGCUaaa-----GCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 15601 | 0.67 | 0.968495 |
Target: 5'- uCGGCcgCGACGuGACGuugcaggUCGGCGa -3' miRNA: 3'- -GCUGuaGUUGCcUUGCuaa----AGCCGCg -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 19697 | 0.67 | 0.968495 |
Target: 5'- gCGGgAUUAuggauuUGGGACGGag-CGGCGCg -3' miRNA: 3'- -GCUgUAGUu-----GCCUUGCUaaaGCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 1363 | 0.67 | 0.968157 |
Target: 5'- gGACgAUCGACgaagGGGACGAUUggaccgaUCcGCGCg -3' miRNA: 3'- gCUG-UAGUUG----CCUUGCUAA-------AGcCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 25254 | 0.67 | 0.965002 |
Target: 5'- aUGACGcCAAUGaaaguccgcuccGAGCGGUUUCugaGGCGCu -3' miRNA: 3'- -GCUGUaGUUGC------------CUUGCUAAAG---CCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 22859 | 0.67 | 0.965002 |
Target: 5'- aCGAUAggCGGCGGGAaGGgcgUCGaGCGCc -3' miRNA: 3'- -GCUGUa-GUUGCCUUgCUaa-AGC-CGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 12071 | 0.67 | 0.965002 |
Target: 5'- gCGAUGUCucagguguuCGGAGCGA--UCGGCu- -3' miRNA: 3'- -GCUGUAGuu-------GCCUUGCUaaAGCCGcg -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 47076 | 0.67 | 0.961246 |
Target: 5'- uCGACGUCuACGGGGCa---UCGG-GCa -3' miRNA: 3'- -GCUGUAGuUGCCUUGcuaaAGCCgCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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