miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24920 5' -48.7 NC_005284.1 + 20139 0.72 0.777313
Target:  5'- --cCAUCGACuGAACGAguugauagUUCGGCGUc -3'
miRNA:   3'- gcuGUAGUUGcCUUGCUa-------AAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 52914 0.72 0.797635
Target:  5'- aCGACAUCAcguGGAACGGcag-GGCGCc -3'
miRNA:   3'- -GCUGUAGUug-CCUUGCUaaagCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 37448 0.72 0.807525
Target:  5'- cCGGCcgCGA-GGAACaucgUCGGCGCg -3'
miRNA:   3'- -GCUGuaGUUgCCUUGcuaaAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 27951 0.72 0.807525
Target:  5'- gCGACAUgAugGGAuCGcccUCGGCGUu -3'
miRNA:   3'- -GCUGUAgUugCCUuGCuaaAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 7141 0.71 0.817219
Target:  5'- uCGGCGUCggU-GAACG---UCGGCGCg -3'
miRNA:   3'- -GCUGUAGuuGcCUUGCuaaAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 10580 0.71 0.817219
Target:  5'- uCGGCGUCGACGaGAaaucgcGCGAgaUCGG-GCg -3'
miRNA:   3'- -GCUGUAGUUGC-CU------UGCUaaAGCCgCG- -5'
24920 5' -48.7 NC_005284.1 + 405 0.71 0.825767
Target:  5'- gGAag-CGGCGGcgcaaauGGCGAgUUUCGGCGCa -3'
miRNA:   3'- gCUguaGUUGCC-------UUGCU-AAAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 26897 0.71 0.826706
Target:  5'- -cACGUUAcccgcugaaauuGCGGGACuGAUUUCGGCGa -3'
miRNA:   3'- gcUGUAGU------------UGCCUUG-CUAAAGCCGCg -5'
24920 5' -48.7 NC_005284.1 + 6813 0.71 0.826706
Target:  5'- uCGGCGaggcCGAgGGGGCGAUUcgcaccgagUUGGCGCg -3'
miRNA:   3'- -GCUGUa---GUUgCCUUGCUAA---------AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 12027 0.71 0.835975
Target:  5'- uCGGCAUU-GCGGAACGAacucgUCaGCGCc -3'
miRNA:   3'- -GCUGUAGuUGCCUUGCUaa---AGcCGCG- -5'
24920 5' -48.7 NC_005284.1 + 8300 0.71 0.845016
Target:  5'- gCGACAUCAggaaGCGGAGgccUGGggUUCGGCa- -3'
miRNA:   3'- -GCUGUAGU----UGCCUU---GCUa-AAGCCGcg -5'
24920 5' -48.7 NC_005284.1 + 17046 0.7 0.870673
Target:  5'- aGAuCAUCGAuCGGAAgcuccgcuaucCGAUgaCGGCGCu -3'
miRNA:   3'- gCU-GUAGUU-GCCUU-----------GCUAaaGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 14502 0.7 0.88571
Target:  5'- uCGACGUCGACugcauguguccauGGaAGCGcagcaugUCGGCGCc -3'
miRNA:   3'- -GCUGUAGUUG-------------CC-UUGCuaa----AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 17819 0.7 0.886474
Target:  5'- gGGC-UCGACGGGACGc-UUUGuGCGCc -3'
miRNA:   3'- gCUGuAGUUGCCUUGCuaAAGC-CGCG- -5'
24920 5' -48.7 NC_005284.1 + 48144 0.7 0.886474
Target:  5'- cCGACAUCAAa-GAGCccAUUcCGGCGCg -3'
miRNA:   3'- -GCUGUAGUUgcCUUGc-UAAaGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 45205 0.7 0.886474
Target:  5'- aCGGCcguGUCgAACGGcACGAgaUCGaGCGCg -3'
miRNA:   3'- -GCUG---UAG-UUGCCuUGCUaaAGC-CGCG- -5'
24920 5' -48.7 NC_005284.1 + 19290 0.7 0.891745
Target:  5'- aCGAcCGUCGACGGAcgcaaguacauggcAuCGA--UCGGCGUg -3'
miRNA:   3'- -GCU-GUAGUUGCCU--------------U-GCUaaAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 10435 0.7 0.893962
Target:  5'- uCGGCAUau-CGGAauuuggcgacGCGGg--CGGCGCa -3'
miRNA:   3'- -GCUGUAguuGCCU----------UGCUaaaGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 48862 0.7 0.893962
Target:  5'- aGGCGaaagCGGCGGAGaag--UCGGCGCc -3'
miRNA:   3'- gCUGUa---GUUGCCUUgcuaaAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 14156 0.7 0.893962
Target:  5'- aCGACGagAGCGGcAAgGAgauUUUCGGCGa -3'
miRNA:   3'- -GCUGUagUUGCC-UUgCU---AAAGCCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.