Results 61 - 80 of 115 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24920 | 5' | -48.7 | NC_005284.1 | + | 39320 | 0.68 | 0.938299 |
Target: 5'- uCGACAUCAccACGcucacGACGA--UCGaGCGCa -3' miRNA: 3'- -GCUGUAGU--UGCc----UUGCUaaAGC-CGCG- -5' |
|||||||
24920 | 5' | -48.7 | NC_005284.1 | + | 12110 | 0.68 | 0.94346 |
Target: 5'- gGAU-UCGGCGGugucucUGAUgccgUCGGCGCg -3' miRNA: 3'- gCUGuAGUUGCCuu----GCUAa---AGCCGCG- -5' |
|||||||
24920 | 5' | -48.7 | NC_005284.1 | + | 22518 | 0.68 | 0.94346 |
Target: 5'- aGACGUUcggAACGGcGACGAcuaCGGUGCc -3' miRNA: 3'- gCUGUAG---UUGCC-UUGCUaaaGCCGCG- -5' |
|||||||
24920 | 5' | -48.7 | NC_005284.1 | + | 13010 | 0.68 | 0.94346 |
Target: 5'- gCGcACAUCAAgacGAACGAgaaUUUCGGUGUa -3' miRNA: 3'- -GC-UGUAGUUgc-CUUGCU---AAAGCCGCG- -5' |
|||||||
24920 | 5' | -48.7 | NC_005284.1 | + | 11611 | 0.68 | 0.94346 |
Target: 5'- cCGAgCGUCAGCGuGAcgugcagcGCGAacUCGGgGCg -3' miRNA: 3'- -GCU-GUAGUUGC-CU--------UGCUaaAGCCgCG- -5' |
|||||||
24920 | 5' | -48.7 | NC_005284.1 | + | 46506 | 0.68 | 0.94346 |
Target: 5'- cCGACGcCGcACGGGACGGa--UGGUGCg -3' miRNA: 3'- -GCUGUaGU-UGCCUUGCUaaaGCCGCG- -5' |
|||||||
24920 | 5' | -48.7 | NC_005284.1 | + | 3419 | 0.68 | 0.948331 |
Target: 5'- uGGCAaugCAGCGGuguuGACGGUUcagUCGGCa- -3' miRNA: 3'- gCUGUa--GUUGCC----UUGCUAA---AGCCGcg -5' |
|||||||
24920 | 5' | -48.7 | NC_005284.1 | + | 22896 | 0.68 | 0.948331 |
Target: 5'- uGAuCAUUuucaguUGGGACGAUg-CGGCGCa -3' miRNA: 3'- gCU-GUAGuu----GCCUUGCUAaaGCCGCG- -5' |
|||||||
24920 | 5' | -48.7 | NC_005284.1 | + | 12042 | 0.68 | 0.948331 |
Target: 5'- cCGACcUCGcGCGGu----UUUCGGCGCg -3' miRNA: 3'- -GCUGuAGU-UGCCuugcuAAAGCCGCG- -5' |
|||||||
24920 | 5' | -48.7 | NC_005284.1 | + | 45153 | 0.68 | 0.948331 |
Target: 5'- gCGugGUCGACGcacGGCGAcgUCGG-GCa -3' miRNA: 3'- -GCugUAGUUGCc--UUGCUaaAGCCgCG- -5' |
|||||||
24920 | 5' | -48.7 | NC_005284.1 | + | 16161 | 0.68 | 0.948331 |
Target: 5'- -cACAUC-GCuGAugGGgcUCGGCGCg -3' miRNA: 3'- gcUGUAGuUGcCUugCUaaAGCCGCG- -5' |
|||||||
24920 | 5' | -48.7 | NC_005284.1 | + | 15837 | 0.68 | 0.948331 |
Target: 5'- aCGGCAcgcUCGGCGu-GCG-UUUCGGaCGCa -3' miRNA: 3'- -GCUGU---AGUUGCcuUGCuAAAGCC-GCG- -5' |
|||||||
24920 | 5' | -48.7 | NC_005284.1 | + | 38389 | 0.67 | 0.952916 |
Target: 5'- aCGACGUCAAauuGAucaACGAUcUUCGGCugGCg -3' miRNA: 3'- -GCUGUAGUUgc-CU---UGCUA-AAGCCG--CG- -5' |
|||||||
24920 | 5' | -48.7 | NC_005284.1 | + | 47733 | 0.67 | 0.952916 |
Target: 5'- aGGCcgugcUCGGCGGuACGg---CGGCGCg -3' miRNA: 3'- gCUGu----AGUUGCCuUGCuaaaGCCGCG- -5' |
|||||||
24920 | 5' | -48.7 | NC_005284.1 | + | 18377 | 0.67 | 0.957219 |
Target: 5'- aCGuCGUCGaaugGCGGAAgGAUaaCGGCGa -3' miRNA: 3'- -GCuGUAGU----UGCCUUgCUAaaGCCGCg -5' |
|||||||
24920 | 5' | -48.7 | NC_005284.1 | + | 45618 | 0.67 | 0.957219 |
Target: 5'- gGACGagGGCGGuGCGAgucuucgCGGgGCa -3' miRNA: 3'- gCUGUagUUGCCuUGCUaaa----GCCgCG- -5' |
|||||||
24920 | 5' | -48.7 | NC_005284.1 | + | 46275 | 0.67 | 0.957219 |
Target: 5'- cCGAUGUCGGCGGAAgcca-UCaGCGCa -3' miRNA: 3'- -GCUGUAGUUGCCUUgcuaaAGcCGCG- -5' |
|||||||
24920 | 5' | -48.7 | NC_005284.1 | + | 47076 | 0.67 | 0.961246 |
Target: 5'- uCGACGUCuACGGGGCa---UCGG-GCa -3' miRNA: 3'- -GCUGUAGuUGCCUUGcuaaAGCCgCG- -5' |
|||||||
24920 | 5' | -48.7 | NC_005284.1 | + | 7691 | 0.67 | 0.961246 |
Target: 5'- nGACGUaCAGCGu-GCGcgUgagCGGUGCg -3' miRNA: 3'- gCUGUA-GUUGCcuUGCuaAa--GCCGCG- -5' |
|||||||
24920 | 5' | -48.7 | NC_005284.1 | + | 12071 | 0.67 | 0.965002 |
Target: 5'- gCGAUGUCucagguguuCGGAGCGA--UCGGCu- -3' miRNA: 3'- -GCUGUAGuu-------GCCUUGCUaaAGCCGcg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home