miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24920 5' -48.7 NC_005284.1 + 6050 0.66 0.971733
Target:  5'- -cGCAUCGuuCGcGACGAUcggaUCGGCGCc -3'
miRNA:   3'- gcUGUAGUu-GCcUUGCUAa---AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 16769 0.66 0.971733
Target:  5'- gGACGUCAGCGGcACGccgacgcCGGCc- -3'
miRNA:   3'- gCUGUAGUUGCCuUGCuaaa---GCCGcg -5'
24920 5' -48.7 NC_005284.1 + 50886 0.66 0.971733
Target:  5'- aGGCAUU--CGG-GCGGc-UCGGCGCa -3'
miRNA:   3'- gCUGUAGuuGCCuUGCUaaAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 11802 0.66 0.971733
Target:  5'- aCGGCcgaGGCGGAGCagg-UCGcGCGCg -3'
miRNA:   3'- -GCUGuagUUGCCUUGcuaaAGC-CGCG- -5'
24920 5' -48.7 NC_005284.1 + 48947 0.66 0.971733
Target:  5'- gGGCAUgcccCGGCGGAcugcaucgACGAag-CGGUGCu -3'
miRNA:   3'- gCUGUA----GUUGCCU--------UGCUaaaGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 47795 0.67 0.968495
Target:  5'- gCGGaggCGACGG-GCGAgcgcuuggCGGCGCu -3'
miRNA:   3'- -GCUguaGUUGCCuUGCUaaa-----GCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 14064 0.67 0.968495
Target:  5'- uGGCGUCAuCGcGAACGAg--UGGUGg -3'
miRNA:   3'- gCUGUAGUuGC-CUUGCUaaaGCCGCg -5'
24920 5' -48.7 NC_005284.1 + 27461 0.67 0.968495
Target:  5'- --uCGUCAGgGGcGCGAUagUUGGUGCa -3'
miRNA:   3'- gcuGUAGUUgCCuUGCUAa-AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 15601 0.67 0.968495
Target:  5'- uCGGCcgCGACGuGACGuugcaggUCGGCGa -3'
miRNA:   3'- -GCUGuaGUUGCcUUGCuaa----AGCCGCg -5'
24920 5' -48.7 NC_005284.1 + 19697 0.67 0.968495
Target:  5'- gCGGgAUUAuggauuUGGGACGGag-CGGCGCg -3'
miRNA:   3'- -GCUgUAGUu-----GCCUUGCUaaaGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 50890 0.67 0.968495
Target:  5'- aCGGCcAUCGcacucCGGAugcGCGA--UCGGUGCa -3'
miRNA:   3'- -GCUG-UAGUu----GCCU---UGCUaaAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 1363 0.67 0.968157
Target:  5'- gGACgAUCGACgaagGGGACGAUUggaccgaUCcGCGCg -3'
miRNA:   3'- gCUG-UAGUUG----CCUUGCUAA-------AGcCGCG- -5'
24920 5' -48.7 NC_005284.1 + 21729 0.67 0.965002
Target:  5'- gCGGCAUCGuGCGcGGCGAUcgcacgcugcUCGGCGUc -3'
miRNA:   3'- -GCUGUAGU-UGCcUUGCUAa---------AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 25254 0.67 0.965002
Target:  5'- aUGACGcCAAUGaaaguccgcuccGAGCGGUUUCugaGGCGCu -3'
miRNA:   3'- -GCUGUaGUUGC------------CUUGCUAAAG---CCGCG- -5'
24920 5' -48.7 NC_005284.1 + 22859 0.67 0.965002
Target:  5'- aCGAUAggCGGCGGGAaGGgcgUCGaGCGCc -3'
miRNA:   3'- -GCUGUa-GUUGCCUUgCUaa-AGC-CGCG- -5'
24920 5' -48.7 NC_005284.1 + 12071 0.67 0.965002
Target:  5'- gCGAUGUCucagguguuCGGAGCGA--UCGGCu- -3'
miRNA:   3'- -GCUGUAGuu-------GCCUUGCUaaAGCCGcg -5'
24920 5' -48.7 NC_005284.1 + 7691 0.67 0.961246
Target:  5'- nGACGUaCAGCGu-GCGcgUgagCGGUGCg -3'
miRNA:   3'- gCUGUA-GUUGCcuUGCuaAa--GCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 47076 0.67 0.961246
Target:  5'- uCGACGUCuACGGGGCa---UCGG-GCa -3'
miRNA:   3'- -GCUGUAGuUGCCUUGcuaaAGCCgCG- -5'
24920 5' -48.7 NC_005284.1 + 46275 0.67 0.957219
Target:  5'- cCGAUGUCGGCGGAAgcca-UCaGCGCa -3'
miRNA:   3'- -GCUGUAGUUGCCUUgcuaaAGcCGCG- -5'
24920 5' -48.7 NC_005284.1 + 45618 0.67 0.957219
Target:  5'- gGACGagGGCGGuGCGAgucuucgCGGgGCa -3'
miRNA:   3'- gCUGUagUUGCCuUGCUaaa----GCCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.