Results 61 - 80 of 115 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24920 | 5' | -48.7 | NC_005284.1 | + | 17070 | 0.68 | 0.932845 |
Target: 5'- gCGAuCGUCGcCGuGuGCGcgUUCGGCGUg -3' miRNA: 3'- -GCU-GUAGUuGC-CuUGCuaAAGCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 32783 | 0.68 | 0.927096 |
Target: 5'- gGACugcgCGACGGAaaaGCGc--UUGGCGCu -3' miRNA: 3'- gCUGua--GUUGCCU---UGCuaaAGCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 53094 | 0.68 | 0.927096 |
Target: 5'- uGACGUCAugGGcAAauc---CGGCGCg -3' miRNA: 3'- gCUGUAGUugCC-UUgcuaaaGCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 14380 | 0.68 | 0.927096 |
Target: 5'- uCGAgGUCGACuGcACGGaaaUCGGCGCc -3' miRNA: 3'- -GCUgUAGUUGcCuUGCUaa-AGCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 7967 | 0.68 | 0.927096 |
Target: 5'- aCGACGaaaCGGCGGuucCGAgaagUUCGcGCGCg -3' miRNA: 3'- -GCUGUa--GUUGCCuu-GCUa---AAGC-CGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 46737 | 0.69 | 0.921054 |
Target: 5'- -aACAgCAAuCGGAcuACGAagUCGGCGCc -3' miRNA: 3'- gcUGUaGUU-GCCU--UGCUaaAGCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 41135 | 0.69 | 0.921054 |
Target: 5'- aGGCAcgCGGCGccccGCGAgaaacgUCGGCGCg -3' miRNA: 3'- gCUGUa-GUUGCcu--UGCUaa----AGCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 9986 | 0.69 | 0.921054 |
Target: 5'- -uGCGcgAGCGcGAGCGAcgcUUCGGCGCg -3' miRNA: 3'- gcUGUagUUGC-CUUGCUa--AAGCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 29842 | 0.69 | 0.919184 |
Target: 5'- gGGCAaccgUCGACGGucAagccgacgcaucucGCGAUggUCGGCGCc -3' miRNA: 3'- gCUGU----AGUUGCC--U--------------UGCUAa-AGCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 37795 | 0.69 | 0.914717 |
Target: 5'- gCGGCcuuUCGGCGGGGCGGcccgUauGCGCg -3' miRNA: 3'- -GCUGu--AGUUGCCUUGCUaa--AgcCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 49584 | 0.69 | 0.914717 |
Target: 5'- aGACGUCgGGCuGAucaGCGGUcUUCGGCGUc -3' miRNA: 3'- gCUGUAG-UUGcCU---UGCUA-AAGCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 16064 | 0.69 | 0.914717 |
Target: 5'- uCGGCAguaagcGCGGGgggcucuucaacACGAUUcUCGGCGCc -3' miRNA: 3'- -GCUGUagu---UGCCU------------UGCUAA-AGCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 9491 | 0.69 | 0.908088 |
Target: 5'- gCGACGcaGGCGGcgacAGCGugggUCGGCGCc -3' miRNA: 3'- -GCUGUagUUGCC----UUGCuaa-AGCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 51467 | 0.69 | 0.908088 |
Target: 5'- gGACGUCgAGCGauGGGCGGUgaUCGcGCGCu -3' miRNA: 3'- gCUGUAG-UUGC--CUUGCUAa-AGC-CGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 25641 | 0.69 | 0.901168 |
Target: 5'- uGACGUUccuAUGGAguaACGGgaaggCGGCGCa -3' miRNA: 3'- gCUGUAGu--UGCCU---UGCUaaa--GCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 10435 | 0.7 | 0.893962 |
Target: 5'- uCGGCAUau-CGGAauuuggcgacGCGGg--CGGCGCa -3' miRNA: 3'- -GCUGUAguuGCCU----------UGCUaaaGCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 48862 | 0.7 | 0.893962 |
Target: 5'- aGGCGaaagCGGCGGAGaag--UCGGCGCc -3' miRNA: 3'- gCUGUa---GUUGCCUUgcuaaAGCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 14156 | 0.7 | 0.893962 |
Target: 5'- aCGACGagAGCGGcAAgGAgauUUUCGGCGa -3' miRNA: 3'- -GCUGUagUUGCC-UUgCU---AAAGCCGCg -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 19290 | 0.7 | 0.891745 |
Target: 5'- aCGAcCGUCGACGGAcgcaaguacauggcAuCGA--UCGGCGUg -3' miRNA: 3'- -GCU-GUAGUUGCCU--------------U-GCUaaAGCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 45205 | 0.7 | 0.886474 |
Target: 5'- aCGGCcguGUCgAACGGcACGAgaUCGaGCGCg -3' miRNA: 3'- -GCUG---UAG-UUGCCuUGCUaaAGC-CGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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