miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24920 5' -48.7 NC_005284.1 + 10093 0.66 0.975574
Target:  5'- gCGACcgCGGCGGGucugaagacgGCGAccgaaagcgcggcgaCGGCGCa -3'
miRNA:   3'- -GCUGuaGUUGCCU----------UGCUaaa------------GCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 10435 0.7 0.893962
Target:  5'- uCGGCAUau-CGGAauuuggcgacGCGGg--CGGCGCa -3'
miRNA:   3'- -GCUGUAguuGCCU----------UGCUaaaGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 10580 0.71 0.817219
Target:  5'- uCGGCGUCGACGaGAaaucgcGCGAgaUCGG-GCg -3'
miRNA:   3'- -GCUGUAGUUGC-CU------UGCUaaAGCCgCG- -5'
24920 5' -48.7 NC_005284.1 + 11611 0.68 0.94346
Target:  5'- cCGAgCGUCAGCGuGAcgugcagcGCGAacUCGGgGCg -3'
miRNA:   3'- -GCU-GUAGUUGC-CU--------UGCUaaAGCCgCG- -5'
24920 5' -48.7 NC_005284.1 + 11711 0.75 0.606839
Target:  5'- uCGcCGUCGACGGGACGAacugacgaagGGCGCg -3'
miRNA:   3'- -GCuGUAGUUGCCUUGCUaaag------CCGCG- -5'
24920 5' -48.7 NC_005284.1 + 11802 0.66 0.971733
Target:  5'- aCGGCcgaGGCGGAGCagg-UCGcGCGCg -3'
miRNA:   3'- -GCUGuagUUGCCUUGcuaaAGC-CGCG- -5'
24920 5' -48.7 NC_005284.1 + 12027 0.71 0.835975
Target:  5'- uCGGCAUU-GCGGAACGAacucgUCaGCGCc -3'
miRNA:   3'- -GCUGUAGuUGCCUUGCUaa---AGcCGCG- -5'
24920 5' -48.7 NC_005284.1 + 12042 0.68 0.948331
Target:  5'- cCGACcUCGcGCGGu----UUUCGGCGCg -3'
miRNA:   3'- -GCUGuAGU-UGCCuugcuAAAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 12071 0.67 0.965002
Target:  5'- gCGAUGUCucagguguuCGGAGCGA--UCGGCu- -3'
miRNA:   3'- -GCUGUAGuu-------GCCUUGCUaaAGCCGcg -5'
24920 5' -48.7 NC_005284.1 + 12110 0.68 0.94346
Target:  5'- gGAU-UCGGCGGugucucUGAUgccgUCGGCGCg -3'
miRNA:   3'- gCUGuAGUUGCCuu----GCUAa---AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 12410 0.66 0.982312
Target:  5'- cCGGCGcgCAACGGcGgGAUcUCGGUcaGCg -3'
miRNA:   3'- -GCUGUa-GUUGCCuUgCUAaAGCCG--CG- -5'
24920 5' -48.7 NC_005284.1 + 13010 0.68 0.94346
Target:  5'- gCGcACAUCAAgacGAACGAgaaUUUCGGUGUa -3'
miRNA:   3'- -GC-UGUAGUUgc-CUUGCU---AAAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 13354 0.66 0.974724
Target:  5'- gGuuGUCGGCGGcaagcuGACGGUgggCGGCGa -3'
miRNA:   3'- gCugUAGUUGCC------UUGCUAaa-GCCGCg -5'
24920 5' -48.7 NC_005284.1 + 13619 0.66 0.980003
Target:  5'- gCGACgGUCGACGGAAaauaccUCGGCu- -3'
miRNA:   3'- -GCUG-UAGUUGCCUUgcuaa-AGCCGcg -5'
24920 5' -48.7 NC_005284.1 + 14064 0.67 0.968495
Target:  5'- uGGCGUCAuCGcGAACGAg--UGGUGg -3'
miRNA:   3'- gCUGUAGUuGC-CUUGCUaaaGCCGCg -5'
24920 5' -48.7 NC_005284.1 + 14156 0.7 0.893962
Target:  5'- aCGACGagAGCGGcAAgGAgauUUUCGGCGa -3'
miRNA:   3'- -GCUGUagUUGCC-UUgCU---AAAGCCGCg -5'
24920 5' -48.7 NC_005284.1 + 14380 0.68 0.927096
Target:  5'- uCGAgGUCGACuGcACGGaaaUCGGCGCc -3'
miRNA:   3'- -GCUgUAGUUGcCuUGCUaa-AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 14502 0.7 0.88571
Target:  5'- uCGACGUCGACugcauguguccauGGaAGCGcagcaugUCGGCGCc -3'
miRNA:   3'- -GCUGUAGUUG-------------CC-UUGCuaa----AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 14548 1.13 0.003117
Target:  5'- gCGACAUCAACGGAACGAUUUCGGCGCu -3'
miRNA:   3'- -GCUGUAGUUGCCUUGCUAAAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 14704 0.77 0.54401
Target:  5'- aCGGCGUCGA-GGuagcgcGCGAgcgUUCGGCGCc -3'
miRNA:   3'- -GCUGUAGUUgCCu-----UGCUa--AAGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.