miRNA display CGI


Results 41 - 60 of 115 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24920 5' -48.7 NC_005284.1 + 15601 0.67 0.968495
Target:  5'- uCGGCcgCGACGuGACGuugcaggUCGGCGa -3'
miRNA:   3'- -GCUGuaGUUGCcUUGCuaa----AGCCGCg -5'
24920 5' -48.7 NC_005284.1 + 15837 0.68 0.948331
Target:  5'- aCGGCAcgcUCGGCGu-GCG-UUUCGGaCGCa -3'
miRNA:   3'- -GCUGU---AGUUGCcuUGCuAAAGCC-GCG- -5'
24920 5' -48.7 NC_005284.1 + 16064 0.69 0.914717
Target:  5'- uCGGCAguaagcGCGGGgggcucuucaacACGAUUcUCGGCGCc -3'
miRNA:   3'- -GCUGUagu---UGCCU------------UGCUAA-AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 16161 0.68 0.948331
Target:  5'- -cACAUC-GCuGAugGGgcUCGGCGCg -3'
miRNA:   3'- gcUGUAGuUGcCUugCUaaAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 16182 0.73 0.73485
Target:  5'- -cGCGcCAACGGcAACGAgugCGGCGCc -3'
miRNA:   3'- gcUGUaGUUGCC-UUGCUaaaGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 16769 0.66 0.971733
Target:  5'- gGACGUCAGCGGcACGccgacgcCGGCc- -3'
miRNA:   3'- gCUGUAGUUGCCuUGCuaaa---GCCGcg -5'
24920 5' -48.7 NC_005284.1 + 17046 0.7 0.870673
Target:  5'- aGAuCAUCGAuCGGAAgcuccgcuaucCGAUgaCGGCGCu -3'
miRNA:   3'- gCU-GUAGUU-GCCUU-----------GCUAaaGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 17070 0.68 0.932845
Target:  5'- gCGAuCGUCGcCGuGuGCGcgUUCGGCGUg -3'
miRNA:   3'- -GCU-GUAGUuGC-CuUGCuaAAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 17698 0.73 0.73485
Target:  5'- uGGCGUCAucaagACGGAggucACGGcgUUCGGCuGCa -3'
miRNA:   3'- gCUGUAGU-----UGCCU----UGCUa-AAGCCG-CG- -5'
24920 5' -48.7 NC_005284.1 + 17819 0.7 0.886474
Target:  5'- gGGC-UCGACGGGACGc-UUUGuGCGCc -3'
miRNA:   3'- gCUGuAGUUGCCUUGCuaAAGC-CGCG- -5'
24920 5' -48.7 NC_005284.1 + 18022 0.68 0.938299
Target:  5'- -aGCgAUCGcCGGcGGCGAUUgUCGGCGCc -3'
miRNA:   3'- gcUG-UAGUuGCC-UUGCUAA-AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 18331 0.66 0.982312
Target:  5'- gCGGCGgcugCAccgaugGCGGAACGAUcgugaUCGGcCGUu -3'
miRNA:   3'- -GCUGUa---GU------UGCCUUGCUAa----AGCC-GCG- -5'
24920 5' -48.7 NC_005284.1 + 18377 0.67 0.957219
Target:  5'- aCGuCGUCGaaugGCGGAAgGAUaaCGGCGa -3'
miRNA:   3'- -GCuGUAGU----UGCCUUgCUAaaGCCGCg -5'
24920 5' -48.7 NC_005284.1 + 18571 0.78 0.468805
Target:  5'- uCGACGUCAcGCcGAGCGcgUucUCGGCGCg -3'
miRNA:   3'- -GCUGUAGU-UGcCUUGCuaA--AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 18802 0.68 0.938299
Target:  5'- aCGACGUCGacgccuGCGGAuacGCGAagUCGGagaacuugguCGCg -3'
miRNA:   3'- -GCUGUAGU------UGCCU---UGCUaaAGCC----------GCG- -5'
24920 5' -48.7 NC_005284.1 + 19024 0.86 0.162892
Target:  5'- cCGGcCAUCGGCGGggUGAUUaggucgaUCGGCGCg -3'
miRNA:   3'- -GCU-GUAGUUGCCuuGCUAA-------AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 19290 0.7 0.891745
Target:  5'- aCGAcCGUCGACGGAcgcaaguacauggcAuCGA--UCGGCGUg -3'
miRNA:   3'- -GCU-GUAGUUGCCU--------------U-GCUaaAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 19393 0.81 0.328395
Target:  5'- cCGugAUCGACGaGGGCGGUgcaggcgugaUCGGCGCg -3'
miRNA:   3'- -GCugUAGUUGC-CUUGCUAa---------AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 19533 0.66 0.982312
Target:  5'- -uACAUC-GCGGGGCGGcagggUUGGCGg -3'
miRNA:   3'- gcUGUAGuUGCCUUGCUaa---AGCCGCg -5'
24920 5' -48.7 NC_005284.1 + 19697 0.67 0.968495
Target:  5'- gCGGgAUUAuggauuUGGGACGGag-CGGCGCg -3'
miRNA:   3'- -GCUgUAGUu-----GCCUUGCUaaaGCCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.