miRNA display CGI


Results 81 - 100 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24920 5' -48.7 NC_005284.1 + 35228 0.76 0.588741
Target:  5'- aCGGCAUaCAACGGAGcCGAccg-GGCGCa -3'
miRNA:   3'- -GCUGUA-GUUGCCUU-GCUaaagCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 35724 0.66 0.978515
Target:  5'- aCGGCAUCGugaaccugacgcaguACGcauuCGAgcuugUCGGCGCu -3'
miRNA:   3'- -GCUGUAGU---------------UGCcuu-GCUaa---AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 37448 0.72 0.807525
Target:  5'- cCGGCcgCGA-GGAACaucgUCGGCGCg -3'
miRNA:   3'- -GCUGuaGUUgCCUUGcuaaAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 37795 0.69 0.914717
Target:  5'- gCGGCcuuUCGGCGGGGCGGcccgUauGCGCg -3'
miRNA:   3'- -GCUGu--AGUUGCCUUGCUaa--AgcCGCG- -5'
24920 5' -48.7 NC_005284.1 + 38389 0.67 0.952916
Target:  5'- aCGACGUCAAauuGAucaACGAUcUUCGGCugGCg -3'
miRNA:   3'- -GCUGUAGUUgc-CU---UGCUA-AAGCCG--CG- -5'
24920 5' -48.7 NC_005284.1 + 39320 0.68 0.938299
Target:  5'- uCGACAUCAccACGcucacGACGA--UCGaGCGCa -3'
miRNA:   3'- -GCUGUAGU--UGCc----UUGCUaaAGC-CGCG- -5'
24920 5' -48.7 NC_005284.1 + 41135 0.69 0.921054
Target:  5'- aGGCAcgCGGCGccccGCGAgaaacgUCGGCGCg -3'
miRNA:   3'- gCUGUa-GUUGCcu--UGCUaa----AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 43935 0.66 0.974724
Target:  5'- gGAuCAUCAACGGcgcgcucaacaaAugGAcaagcUUcgaUCGGCGCa -3'
miRNA:   3'- gCU-GUAGUUGCC------------UugCU-----AA---AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 45153 0.68 0.948331
Target:  5'- gCGugGUCGACGcacGGCGAcgUCGG-GCa -3'
miRNA:   3'- -GCugUAGUUGCc--UUGCUaaAGCCgCG- -5'
24920 5' -48.7 NC_005284.1 + 45205 0.7 0.886474
Target:  5'- aCGGCcguGUCgAACGGcACGAgaUCGaGCGCg -3'
miRNA:   3'- -GCUG---UAG-UUGCCuUGCUaaAGC-CGCG- -5'
24920 5' -48.7 NC_005284.1 + 45396 0.74 0.679391
Target:  5'- uGugAUCGGCGuGACGAUaa-GGCGCa -3'
miRNA:   3'- gCugUAGUUGCcUUGCUAaagCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 45434 0.66 0.980003
Target:  5'- aCGAUAUUcGCGGcgucGCGAUUgUCGG-GCg -3'
miRNA:   3'- -GCUGUAGuUGCCu---UGCUAA-AGCCgCG- -5'
24920 5' -48.7 NC_005284.1 + 45618 0.67 0.957219
Target:  5'- gGACGagGGCGGuGCGAgucuucgCGGgGCa -3'
miRNA:   3'- gCUGUagUUGCCuUGCUaaa----GCCgCG- -5'
24920 5' -48.7 NC_005284.1 + 46275 0.67 0.957219
Target:  5'- cCGAUGUCGGCGGAAgcca-UCaGCGCa -3'
miRNA:   3'- -GCUGUAGUUGCCUUgcuaaAGcCGCG- -5'
24920 5' -48.7 NC_005284.1 + 46506 0.68 0.94346
Target:  5'- cCGACGcCGcACGGGACGGa--UGGUGCg -3'
miRNA:   3'- -GCUGUaGU-UGCCUUGCUaaaGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 46737 0.69 0.921054
Target:  5'- -aACAgCAAuCGGAcuACGAagUCGGCGCc -3'
miRNA:   3'- gcUGUaGUU-GCCU--UGCUaaAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 47076 0.67 0.961246
Target:  5'- uCGACGUCuACGGGGCa---UCGG-GCa -3'
miRNA:   3'- -GCUGUAGuUGCCUUGcuaaAGCCgCG- -5'
24920 5' -48.7 NC_005284.1 + 47733 0.67 0.952916
Target:  5'- aGGCcgugcUCGGCGGuACGg---CGGCGCg -3'
miRNA:   3'- gCUGu----AGUUGCCuUGCuaaaGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 47795 0.67 0.968495
Target:  5'- gCGGaggCGACGG-GCGAgcgcuuggCGGCGCu -3'
miRNA:   3'- -GCUguaGUUGCCuUGCUaaa-----GCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 48144 0.7 0.886474
Target:  5'- cCGACAUCAAa-GAGCccAUUcCGGCGCg -3'
miRNA:   3'- -GCUGUAGUUgcCUUGc-UAAaGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.