miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24920 5' -48.7 NC_005284.1 + 53094 0.68 0.927096
Target:  5'- uGACGUCAugGGcAAauc---CGGCGCg -3'
miRNA:   3'- gCUGUAGUugCC-UUgcuaaaGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 53020 0.66 0.977477
Target:  5'- -uGCGUCGA-GGAAagccauCGGcUUCGGCGCc -3'
miRNA:   3'- gcUGUAGUUgCCUU------GCUaAAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 52914 0.72 0.797635
Target:  5'- aCGACAUCAcguGGAACGGcag-GGCGCc -3'
miRNA:   3'- -GCUGUAGUug-CCUUGCUaaagCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 51732 0.72 0.766906
Target:  5'- -cGCGUguACGGAAaGAUcgCGGCGCg -3'
miRNA:   3'- gcUGUAguUGCCUUgCUAaaGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 51672 0.73 0.743509
Target:  5'- gCGACgAUCAGCuuucgcgaucucGAGCGcaGUUUCGGCGCg -3'
miRNA:   3'- -GCUG-UAGUUGc-----------CUUGC--UAAAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 51467 0.69 0.908088
Target:  5'- gGACGUCgAGCGauGGGCGGUgaUCGcGCGCu -3'
miRNA:   3'- gCUGUAG-UUGC--CUUGCUAa-AGC-CGCG- -5'
24920 5' -48.7 NC_005284.1 + 50890 0.67 0.968495
Target:  5'- aCGGCcAUCGcacucCGGAugcGCGA--UCGGUGCa -3'
miRNA:   3'- -GCUG-UAGUu----GCCU---UGCUaaAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 50886 0.66 0.971733
Target:  5'- aGGCAUU--CGG-GCGGc-UCGGCGCa -3'
miRNA:   3'- gCUGUAGuuGCCuUGCUaaAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 49637 0.66 0.974724
Target:  5'- -cGCGUCAGCGGcguuccGACGGUUcgaUCGaGCGa -3'
miRNA:   3'- gcUGUAGUUGCC------UUGCUAA---AGC-CGCg -5'
24920 5' -48.7 NC_005284.1 + 49584 0.69 0.914717
Target:  5'- aGACGUCgGGCuGAucaGCGGUcUUCGGCGUc -3'
miRNA:   3'- gCUGUAG-UUGcCU---UGCUA-AAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 49508 0.66 0.974724
Target:  5'- uCGAgGUCGcCGGAuGCGAUUUCGuCGa -3'
miRNA:   3'- -GCUgUAGUuGCCU-UGCUAAAGCcGCg -5'
24920 5' -48.7 NC_005284.1 + 49101 0.66 0.980003
Target:  5'- uCGGCAUCGagcagcGCGaGGGCGAagugUUCaugcguuuuaaGGCGCg -3'
miRNA:   3'- -GCUGUAGU------UGC-CUUGCUa---AAG-----------CCGCG- -5'
24920 5' -48.7 NC_005284.1 + 48947 0.66 0.971733
Target:  5'- gGGCAUgcccCGGCGGAcugcaucgACGAag-CGGUGCu -3'
miRNA:   3'- gCUGUA----GUUGCCU--------UGCUaaaGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 48889 0.66 0.974724
Target:  5'- -cGCGUCGACGGGAaccagUCGG-GCa -3'
miRNA:   3'- gcUGUAGUUGCCUUgcuaaAGCCgCG- -5'
24920 5' -48.7 NC_005284.1 + 48862 0.7 0.893962
Target:  5'- aGGCGaaagCGGCGGAGaag--UCGGCGCc -3'
miRNA:   3'- gCUGUa---GUUGCCUUgcuaaAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 48144 0.7 0.886474
Target:  5'- cCGACAUCAAa-GAGCccAUUcCGGCGCg -3'
miRNA:   3'- -GCUGUAGUUgcCUUGc-UAAaGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 47795 0.67 0.968495
Target:  5'- gCGGaggCGACGG-GCGAgcgcuuggCGGCGCu -3'
miRNA:   3'- -GCUguaGUUGCCuUGCUaaa-----GCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 47733 0.67 0.952916
Target:  5'- aGGCcgugcUCGGCGGuACGg---CGGCGCg -3'
miRNA:   3'- gCUGu----AGUUGCCuUGCuaaaGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 47076 0.67 0.961246
Target:  5'- uCGACGUCuACGGGGCa---UCGG-GCa -3'
miRNA:   3'- -GCUGUAGuUGCCUUGcuaaAGCCgCG- -5'
24920 5' -48.7 NC_005284.1 + 46737 0.69 0.921054
Target:  5'- -aACAgCAAuCGGAcuACGAagUCGGCGCc -3'
miRNA:   3'- gcUGUaGUU-GCCU--UGCUaaAGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.