miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24920 5' -48.7 NC_005284.1 + 46506 0.68 0.94346
Target:  5'- cCGACGcCGcACGGGACGGa--UGGUGCg -3'
miRNA:   3'- -GCUGUaGU-UGCCUUGCUaaaGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 46275 0.67 0.957219
Target:  5'- cCGAUGUCGGCGGAAgcca-UCaGCGCa -3'
miRNA:   3'- -GCUGUAGUUGCCUUgcuaaAGcCGCG- -5'
24920 5' -48.7 NC_005284.1 + 45618 0.67 0.957219
Target:  5'- gGACGagGGCGGuGCGAgucuucgCGGgGCa -3'
miRNA:   3'- gCUGUagUUGCCuUGCUaaa----GCCgCG- -5'
24920 5' -48.7 NC_005284.1 + 45434 0.66 0.980003
Target:  5'- aCGAUAUUcGCGGcgucGCGAUUgUCGG-GCg -3'
miRNA:   3'- -GCUGUAGuUGCCu---UGCUAA-AGCCgCG- -5'
24920 5' -48.7 NC_005284.1 + 45396 0.74 0.679391
Target:  5'- uGugAUCGGCGuGACGAUaa-GGCGCa -3'
miRNA:   3'- gCugUAGUUGCcUUGCUAaagCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 45205 0.7 0.886474
Target:  5'- aCGGCcguGUCgAACGGcACGAgaUCGaGCGCg -3'
miRNA:   3'- -GCUG---UAG-UUGCCuUGCUaaAGC-CGCG- -5'
24920 5' -48.7 NC_005284.1 + 45153 0.68 0.948331
Target:  5'- gCGugGUCGACGcacGGCGAcgUCGG-GCa -3'
miRNA:   3'- -GCugUAGUUGCc--UUGCUaaAGCCgCG- -5'
24920 5' -48.7 NC_005284.1 + 43935 0.66 0.974724
Target:  5'- gGAuCAUCAACGGcgcgcucaacaaAugGAcaagcUUcgaUCGGCGCa -3'
miRNA:   3'- gCU-GUAGUUGCC------------UugCU-----AA---AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 41135 0.69 0.921054
Target:  5'- aGGCAcgCGGCGccccGCGAgaaacgUCGGCGCg -3'
miRNA:   3'- gCUGUa-GUUGCcu--UGCUaa----AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 39320 0.68 0.938299
Target:  5'- uCGACAUCAccACGcucacGACGA--UCGaGCGCa -3'
miRNA:   3'- -GCUGUAGU--UGCc----UUGCUaaAGC-CGCG- -5'
24920 5' -48.7 NC_005284.1 + 38389 0.67 0.952916
Target:  5'- aCGACGUCAAauuGAucaACGAUcUUCGGCugGCg -3'
miRNA:   3'- -GCUGUAGUUgc-CU---UGCUA-AAGCCG--CG- -5'
24920 5' -48.7 NC_005284.1 + 37795 0.69 0.914717
Target:  5'- gCGGCcuuUCGGCGGGGCGGcccgUauGCGCg -3'
miRNA:   3'- -GCUGu--AGUUGCCUUGCUaa--AgcCGCG- -5'
24920 5' -48.7 NC_005284.1 + 37448 0.72 0.807525
Target:  5'- cCGGCcgCGA-GGAACaucgUCGGCGCg -3'
miRNA:   3'- -GCUGuaGUUgCCUUGcuaaAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 35724 0.66 0.978515
Target:  5'- aCGGCAUCGugaaccugacgcaguACGcauuCGAgcuugUCGGCGCu -3'
miRNA:   3'- -GCUGUAGU---------------UGCcuu-GCUaa---AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 35228 0.76 0.588741
Target:  5'- aCGGCAUaCAACGGAGcCGAccg-GGCGCa -3'
miRNA:   3'- -GCUGUA-GUUGCCUU-GCUaaagCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 33866 0.68 0.932845
Target:  5'- aCGGCGcgaUCGACu--ACGAagUCGGCGCc -3'
miRNA:   3'- -GCUGU---AGUUGccuUGCUaaAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 32783 0.68 0.927096
Target:  5'- gGACugcgCGACGGAaaaGCGc--UUGGCGCu -3'
miRNA:   3'- gCUGua--GUUGCCU---UGCuaaAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 30882 0.77 0.5112
Target:  5'- aCGACcgCGAuCGGGACGAUccggacuaucgUCGGUGCg -3'
miRNA:   3'- -GCUGuaGUU-GCCUUGCUAa----------AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 29914 0.66 0.974724
Target:  5'- uGAcCGUCGACGGuugcccauGCaGUUcagugcacUCGGCGCa -3'
miRNA:   3'- gCU-GUAGUUGCCu-------UGcUAA--------AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 29842 0.69 0.919184
Target:  5'- gGGCAaccgUCGACGGucAagccgacgcaucucGCGAUggUCGGCGCc -3'
miRNA:   3'- gCUGU----AGUUGCC--U--------------UGCUAa-AGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.