miRNA display CGI


Results 41 - 60 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24920 5' -48.7 NC_005284.1 + 27951 0.72 0.807525
Target:  5'- gCGACAUgAugGGAuCGcccUCGGCGUu -3'
miRNA:   3'- -GCUGUAgUugCCUuGCuaaAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 27461 0.67 0.968495
Target:  5'- --uCGUCAGgGGcGCGAUagUUGGUGCa -3'
miRNA:   3'- gcuGUAGUUgCCuUGCUAa-AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 26897 0.71 0.826706
Target:  5'- -cACGUUAcccgcugaaauuGCGGGACuGAUUUCGGCGa -3'
miRNA:   3'- gcUGUAGU------------UGCCUUG-CUAAAGCCGCg -5'
24920 5' -48.7 NC_005284.1 + 26334 0.68 0.932845
Target:  5'- gGACAuucuUCAgcGCGGcACGGUcaacgcCGGCGCg -3'
miRNA:   3'- gCUGU----AGU--UGCCuUGCUAaa----GCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 25641 0.69 0.901168
Target:  5'- uGACGUUccuAUGGAguaACGGgaaggCGGCGCa -3'
miRNA:   3'- gCUGUAGu--UGCCU---UGCUaaa--GCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 25254 0.67 0.965002
Target:  5'- aUGACGcCAAUGaaaguccgcuccGAGCGGUUUCugaGGCGCu -3'
miRNA:   3'- -GCUGUaGUUGC------------CUUGCUAAAG---CCGCG- -5'
24920 5' -48.7 NC_005284.1 + 22896 0.68 0.948331
Target:  5'- uGAuCAUUuucaguUGGGACGAUg-CGGCGCa -3'
miRNA:   3'- gCU-GUAGuu----GCCUUGCUAaaGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 22859 0.67 0.965002
Target:  5'- aCGAUAggCGGCGGGAaGGgcgUCGaGCGCc -3'
miRNA:   3'- -GCUGUa-GUUGCCUUgCUaa-AGC-CGCG- -5'
24920 5' -48.7 NC_005284.1 + 22518 0.68 0.94346
Target:  5'- aGACGUUcggAACGGcGACGAcuaCGGUGCc -3'
miRNA:   3'- gCUGUAG---UUGCC-UUGCUaaaGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 22241 0.66 0.982312
Target:  5'- -uACGUCGagguguucGCGG-GCGGgg-CGGCGCu -3'
miRNA:   3'- gcUGUAGU--------UGCCuUGCUaaaGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 21880 0.82 0.289033
Target:  5'- aGACGUCGacgcagcgguuGCGGAACGcguUUUCGGCGUc -3'
miRNA:   3'- gCUGUAGU-----------UGCCUUGCu--AAAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 21729 0.67 0.965002
Target:  5'- gCGGCAUCGuGCGcGGCGAUcgcacgcugcUCGGCGUc -3'
miRNA:   3'- -GCUGUAGU-UGCcUUGCUAa---------AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 21315 0.66 0.980003
Target:  5'- aGGCGguUCAAUGcGGGCGAcuggCGGgGCg -3'
miRNA:   3'- gCUGU--AGUUGC-CUUGCUaaa-GCCgCG- -5'
24920 5' -48.7 NC_005284.1 + 20139 0.72 0.777313
Target:  5'- --cCAUCGACuGAACGAguugauagUUCGGCGUc -3'
miRNA:   3'- gcuGUAGUUGcCUUGCUa-------AAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 19789 0.66 0.980003
Target:  5'- gGGCAUgGACGGcAGCGcgg-CGGCa- -3'
miRNA:   3'- gCUGUAgUUGCC-UUGCuaaaGCCGcg -5'
24920 5' -48.7 NC_005284.1 + 19697 0.67 0.968495
Target:  5'- gCGGgAUUAuggauuUGGGACGGag-CGGCGCg -3'
miRNA:   3'- -GCUgUAGUu-----GCCUUGCUaaaGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 19533 0.66 0.982312
Target:  5'- -uACAUC-GCGGGGCGGcagggUUGGCGg -3'
miRNA:   3'- gcUGUAGuUGCCUUGCUaa---AGCCGCg -5'
24920 5' -48.7 NC_005284.1 + 19393 0.81 0.328395
Target:  5'- cCGugAUCGACGaGGGCGGUgcaggcgugaUCGGCGCg -3'
miRNA:   3'- -GCugUAGUUGC-CUUGCUAa---------AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 19290 0.7 0.891745
Target:  5'- aCGAcCGUCGACGGAcgcaaguacauggcAuCGA--UCGGCGUg -3'
miRNA:   3'- -GCU-GUAGUUGCCU--------------U-GCUaaAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 19024 0.86 0.162892
Target:  5'- cCGGcCAUCGGCGGggUGAUUaggucgaUCGGCGCg -3'
miRNA:   3'- -GCU-GUAGUUGCCuuGCUAA-------AGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.