miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24920 5' -48.7 NC_005284.1 + 45205 0.7 0.886474
Target:  5'- aCGGCcguGUCgAACGGcACGAgaUCGaGCGCg -3'
miRNA:   3'- -GCUG---UAG-UUGCCuUGCUaaAGC-CGCG- -5'
24920 5' -48.7 NC_005284.1 + 37448 0.72 0.807525
Target:  5'- cCGGCcgCGA-GGAACaucgUCGGCGCg -3'
miRNA:   3'- -GCUGuaGUUgCCUUGcuaaAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 10580 0.71 0.817219
Target:  5'- uCGGCGUCGACGaGAaaucgcGCGAgaUCGG-GCg -3'
miRNA:   3'- -GCUGUAGUUGC-CU------UGCUaaAGCCgCG- -5'
24920 5' -48.7 NC_005284.1 + 405 0.71 0.825767
Target:  5'- gGAag-CGGCGGcgcaaauGGCGAgUUUCGGCGCa -3'
miRNA:   3'- gCUguaGUUGCC-------UUGCU-AAAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 26897 0.71 0.826706
Target:  5'- -cACGUUAcccgcugaaauuGCGGGACuGAUUUCGGCGa -3'
miRNA:   3'- gcUGUAGU------------UGCCUUG-CUAAAGCCGCg -5'
24920 5' -48.7 NC_005284.1 + 6813 0.71 0.826706
Target:  5'- uCGGCGaggcCGAgGGGGCGAUUcgcaccgagUUGGCGCg -3'
miRNA:   3'- -GCUGUa---GUUgCCUUGCUAA---------AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 17046 0.7 0.870673
Target:  5'- aGAuCAUCGAuCGGAAgcuccgcuaucCGAUgaCGGCGCu -3'
miRNA:   3'- gCU-GUAGUU-GCCUU-----------GCUAaaGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 17819 0.7 0.886474
Target:  5'- gGGC-UCGACGGGACGc-UUUGuGCGCc -3'
miRNA:   3'- gCUGuAGUUGCCUUGCuaAAGC-CGCG- -5'
24920 5' -48.7 NC_005284.1 + 48144 0.7 0.886474
Target:  5'- cCGACAUCAAa-GAGCccAUUcCGGCGCg -3'
miRNA:   3'- -GCUGUAGUUgcCUUGc-UAAaGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 52914 0.72 0.797635
Target:  5'- aCGACAUCAcguGGAACGGcag-GGCGCc -3'
miRNA:   3'- -GCUGUAGUug-CCUUGCUaaagCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 51732 0.72 0.766906
Target:  5'- -cGCGUguACGGAAaGAUcgCGGCGCg -3'
miRNA:   3'- gcUGUAguUGCCUUgCUAaaGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 1759 0.73 0.745662
Target:  5'- cCGAaaacCGUCGuaugGCGGAGCGAUaUCaGGCGUg -3'
miRNA:   3'- -GCU----GUAGU----UGCCUUGCUAaAG-CCGCG- -5'
24920 5' -48.7 NC_005284.1 + 21880 0.82 0.289033
Target:  5'- aGACGUCGacgcagcgguuGCGGAACGcguUUUCGGCGUc -3'
miRNA:   3'- gCUGUAGU-----------UGCCUUGCu--AAAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 19393 0.81 0.328395
Target:  5'- cCGugAUCGACGaGGGCGGUgcaggcgugaUCGGCGCg -3'
miRNA:   3'- -GCugUAGUUGC-CUUGCUAa---------AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 7663 0.77 0.53299
Target:  5'- gCGGCgucgGUCAAUGGGcUGAUUUCGGCGa -3'
miRNA:   3'- -GCUG----UAGUUGCCUuGCUAAAGCCGCg -5'
24920 5' -48.7 NC_005284.1 + 11711 0.75 0.606839
Target:  5'- uCGcCGUCGACGGGACGAacugacgaagGGCGCg -3'
miRNA:   3'- -GCuGUAGUUGCCUUGCUaaag------CCGCG- -5'
24920 5' -48.7 NC_005284.1 + 921 0.73 0.712908
Target:  5'- uGGCAUCGGCauguucgugcuGGAcgACGAgUUCGGUGCc -3'
miRNA:   3'- gCUGUAGUUG-----------CCU--UGCUaAAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 1684 0.73 0.73485
Target:  5'- aCGACAUCGACGG-GCGg---CGGCa- -3'
miRNA:   3'- -GCUGUAGUUGCCuUGCuaaaGCCGcg -5'
24920 5' -48.7 NC_005284.1 + 17698 0.73 0.73485
Target:  5'- uGGCGUCAucaagACGGAggucACGGcgUUCGGCuGCa -3'
miRNA:   3'- gCUGUAGU-----UGCCU----UGCUa-AAGCCG-CG- -5'
24920 5' -48.7 NC_005284.1 + 51672 0.73 0.743509
Target:  5'- gCGACgAUCAGCuuucgcgaucucGAGCGcaGUUUCGGCGCg -3'
miRNA:   3'- -GCUG-UAGUUGc-----------CUUGC--UAAAGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.