miRNA display CGI


Results 41 - 60 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24920 5' -48.7 NC_005284.1 + 921 0.73 0.712908
Target:  5'- uGGCAUCGGCauguucgugcuGGAcgACGAgUUCGGUGCc -3'
miRNA:   3'- gCUGUAGUUG-----------CCU--UGCUaAAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 11711 0.75 0.606839
Target:  5'- uCGcCGUCGACGGGACGAacugacgaagGGCGCg -3'
miRNA:   3'- -GCuGUAGUUGCCUUGCUaaag------CCGCG- -5'
24920 5' -48.7 NC_005284.1 + 7663 0.77 0.53299
Target:  5'- gCGGCgucgGUCAAUGGGcUGAUUUCGGCGa -3'
miRNA:   3'- -GCUG----UAGUUGCCUuGCUAAAGCCGCg -5'
24920 5' -48.7 NC_005284.1 + 19393 0.81 0.328395
Target:  5'- cCGugAUCGACGaGGGCGGUgcaggcgugaUCGGCGCg -3'
miRNA:   3'- -GCugUAGUUGC-CUUGCUAa---------AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 21880 0.82 0.289033
Target:  5'- aGACGUCGacgcagcgguuGCGGAACGcguUUUCGGCGUc -3'
miRNA:   3'- gCUGUAGU-----------UGCCUUGCu--AAAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 405 0.71 0.825767
Target:  5'- gGAag-CGGCGGcgcaaauGGCGAgUUUCGGCGCa -3'
miRNA:   3'- gCUguaGUUGCC-------UUGCU-AAAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 26897 0.71 0.826706
Target:  5'- -cACGUUAcccgcugaaauuGCGGGACuGAUUUCGGCGa -3'
miRNA:   3'- gcUGUAGU------------UGCCUUG-CUAAAGCCGCg -5'
24920 5' -48.7 NC_005284.1 + 16064 0.69 0.914717
Target:  5'- uCGGCAguaagcGCGGGgggcucuucaacACGAUUcUCGGCGCc -3'
miRNA:   3'- -GCUGUagu---UGCCU------------UGCUAA-AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 51467 0.69 0.908088
Target:  5'- gGACGUCgAGCGauGGGCGGUgaUCGcGCGCu -3'
miRNA:   3'- gCUGUAG-UUGC--CUUGCUAa-AGC-CGCG- -5'
24920 5' -48.7 NC_005284.1 + 9491 0.69 0.908088
Target:  5'- gCGACGcaGGCGGcgacAGCGugggUCGGCGCc -3'
miRNA:   3'- -GCUGUagUUGCC----UUGCuaa-AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 25641 0.69 0.901168
Target:  5'- uGACGUUccuAUGGAguaACGGgaaggCGGCGCa -3'
miRNA:   3'- gCUGUAGu--UGCCU---UGCUaaa--GCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 14156 0.7 0.893962
Target:  5'- aCGACGagAGCGGcAAgGAgauUUUCGGCGa -3'
miRNA:   3'- -GCUGUagUUGCC-UUgCU---AAAGCCGCg -5'
24920 5' -48.7 NC_005284.1 + 48862 0.7 0.893962
Target:  5'- aGGCGaaagCGGCGGAGaag--UCGGCGCc -3'
miRNA:   3'- gCUGUa---GUUGCCUUgcuaaAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 10435 0.7 0.893962
Target:  5'- uCGGCAUau-CGGAauuuggcgacGCGGg--CGGCGCa -3'
miRNA:   3'- -GCUGUAguuGCCU----------UGCUaaaGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 19290 0.7 0.891745
Target:  5'- aCGAcCGUCGACGGAcgcaaguacauggcAuCGA--UCGGCGUg -3'
miRNA:   3'- -GCU-GUAGUUGCCU--------------U-GCUaaAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 45205 0.7 0.886474
Target:  5'- aCGGCcguGUCgAACGGcACGAgaUCGaGCGCg -3'
miRNA:   3'- -GCUG---UAG-UUGCCuUGCUaaAGC-CGCG- -5'
24920 5' -48.7 NC_005284.1 + 48144 0.7 0.886474
Target:  5'- cCGACAUCAAa-GAGCccAUUcCGGCGCg -3'
miRNA:   3'- -GCUGUAGUUgcCUUGc-UAAaGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 17819 0.7 0.886474
Target:  5'- gGGC-UCGACGGGACGc-UUUGuGCGCc -3'
miRNA:   3'- gCUGuAGUUGCCUUGCuaAAGC-CGCG- -5'
24920 5' -48.7 NC_005284.1 + 17046 0.7 0.870673
Target:  5'- aGAuCAUCGAuCGGAAgcuccgcuaucCGAUgaCGGCGCu -3'
miRNA:   3'- gCU-GUAGUU-GCCUU-----------GCUAaaGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 6813 0.71 0.826706
Target:  5'- uCGGCGaggcCGAgGGGGCGAUUcgcaccgagUUGGCGCg -3'
miRNA:   3'- -GCUGUa---GUUgCCUUGCUAA---------AGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.