miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24920 5' -48.7 NC_005284.1 + 18331 0.66 0.982312
Target:  5'- gCGGCGgcugCAccgaugGCGGAACGAUcgugaUCGGcCGUu -3'
miRNA:   3'- -GCUGUa---GU------UGCCUUGCUAa----AGCC-GCG- -5'
24920 5' -48.7 NC_005284.1 + 33866 0.68 0.932845
Target:  5'- aCGGCGcgaUCGACu--ACGAagUCGGCGCc -3'
miRNA:   3'- -GCUGU---AGUUGccuUGCUaaAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 9986 0.69 0.921054
Target:  5'- -uGCGcgAGCGcGAGCGAcgcUUCGGCGCg -3'
miRNA:   3'- gcUGUagUUGC-CUUGCUa--AAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 19024 0.86 0.162892
Target:  5'- cCGGcCAUCGGCGGggUGAUUaggucgaUCGGCGCg -3'
miRNA:   3'- -GCU-GUAGUUGCCuuGCUAA-------AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 29914 0.66 0.974724
Target:  5'- uGAcCGUCGACGGuugcccauGCaGUUcagugcacUCGGCGCa -3'
miRNA:   3'- gCU-GUAGUUGCCu-------UGcUAA--------AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 43935 0.66 0.974724
Target:  5'- gGAuCAUCAACGGcgcgcucaacaaAugGAcaagcUUcgaUCGGCGCa -3'
miRNA:   3'- gCU-GUAGUUGCC------------UugCU-----AA---AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 49508 0.66 0.974724
Target:  5'- uCGAgGUCGcCGGAuGCGAUUUCGuCGa -3'
miRNA:   3'- -GCUgUAGUuGCCU-UGCUAAAGCcGCg -5'
24920 5' -48.7 NC_005284.1 + 6050 0.66 0.971733
Target:  5'- -cGCAUCGuuCGcGACGAUcggaUCGGCGCc -3'
miRNA:   3'- gcUGUAGUu-GCcUUGCUAa---AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 50890 0.67 0.968495
Target:  5'- aCGGCcAUCGcacucCGGAugcGCGA--UCGGUGCa -3'
miRNA:   3'- -GCUG-UAGUu----GCCU---UGCUaaAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 17070 0.68 0.932845
Target:  5'- gCGAuCGUCGcCGuGuGCGcgUUCGGCGUg -3'
miRNA:   3'- -GCU-GUAGUuGC-CuUGCuaAAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 18022 0.68 0.938299
Target:  5'- -aGCgAUCGcCGGcGGCGAUUgUCGGCGCc -3'
miRNA:   3'- gcUG-UAGUuGCC-UUGCUAA-AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 27461 0.67 0.968495
Target:  5'- --uCGUCAGgGGcGCGAUagUUGGUGCa -3'
miRNA:   3'- gcuGUAGUUgCCuUGCUAa-AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 4587 0.66 0.980003
Target:  5'- uGACcgaggGUCuuCGGcguuuCGAgUUCGGCGCu -3'
miRNA:   3'- gCUG-----UAGuuGCCuu---GCUaAAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 18802 0.68 0.938299
Target:  5'- aCGACGUCGacgccuGCGGAuacGCGAagUCGGagaacuugguCGCg -3'
miRNA:   3'- -GCUGUAGU------UGCCU---UGCUaaAGCC----------GCG- -5'
24920 5' -48.7 NC_005284.1 + 35724 0.66 0.978515
Target:  5'- aCGGCAUCGugaaccugacgcaguACGcauuCGAgcuugUCGGCGCu -3'
miRNA:   3'- -GCUGUAGU---------------UGCcuu-GCUaa---AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 16769 0.66 0.971733
Target:  5'- gGACGUCAGCGGcACGccgacgcCGGCc- -3'
miRNA:   3'- gCUGUAGUUGCCuUGCuaaa---GCCGcg -5'
24920 5' -48.7 NC_005284.1 + 39320 0.68 0.938299
Target:  5'- uCGACAUCAccACGcucacGACGA--UCGaGCGCa -3'
miRNA:   3'- -GCUGUAGU--UGCc----UUGCUaaAGC-CGCG- -5'
24920 5' -48.7 NC_005284.1 + 32783 0.68 0.927096
Target:  5'- gGACugcgCGACGGAaaaGCGc--UUGGCGCu -3'
miRNA:   3'- gCUGua--GUUGCCU---UGCuaaAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 53020 0.66 0.977477
Target:  5'- -uGCGUCGA-GGAAagccauCGGcUUCGGCGCc -3'
miRNA:   3'- gcUGUAGUUgCCUU------GCUaAAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 48889 0.66 0.974724
Target:  5'- -cGCGUCGACGGGAaccagUCGG-GCa -3'
miRNA:   3'- gcUGUAGUUGCCUUgcuaaAGCCgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.