miRNA display CGI


Results 21 - 40 of 115 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24920 5' -48.7 NC_005284.1 + 27461 0.67 0.968495
Target:  5'- --uCGUCAGgGGcGCGAUagUUGGUGCa -3'
miRNA:   3'- gcuGUAGUUgCCuUGCUAa-AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 53020 0.66 0.977477
Target:  5'- -uGCGUCGA-GGAAagccauCGGcUUCGGCGCc -3'
miRNA:   3'- gcUGUAGUUgCCUU------GCUaAAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 30882 0.77 0.5112
Target:  5'- aCGACcgCGAuCGGGACGAUccggacuaucgUCGGUGCg -3'
miRNA:   3'- -GCUGuaGUU-GCCUUGCUAa----------AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 20139 0.72 0.777313
Target:  5'- --cCAUCGACuGAACGAguugauagUUCGGCGUc -3'
miRNA:   3'- gcuGUAGUUGcCUUGCUa-------AAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 33866 0.68 0.932845
Target:  5'- aCGGCGcgaUCGACu--ACGAagUCGGCGCc -3'
miRNA:   3'- -GCUGU---AGUUGccuUGCUaaAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 35724 0.66 0.978515
Target:  5'- aCGGCAUCGugaaccugacgcaguACGcauuCGAgcuugUCGGCGCu -3'
miRNA:   3'- -GCUGUAGU---------------UGCcuu-GCUaa---AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 27951 0.72 0.807525
Target:  5'- gCGACAUgAugGGAuCGcccUCGGCGUu -3'
miRNA:   3'- -GCUGUAgUugCCUuGCuaaAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 4587 0.66 0.980003
Target:  5'- uGACcgaggGUCuuCGGcguuuCGAgUUCGGCGCu -3'
miRNA:   3'- gCUG-----UAGuuGCCuu---GCUaAAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 18331 0.66 0.982312
Target:  5'- gCGGCGgcugCAccgaugGCGGAACGAUcgugaUCGGcCGUu -3'
miRNA:   3'- -GCUGUa---GU------UGCCUUGCUAa----AGCC-GCG- -5'
24920 5' -48.7 NC_005284.1 + 32783 0.68 0.927096
Target:  5'- gGACugcgCGACGGAaaaGCGc--UUGGCGCu -3'
miRNA:   3'- gCUGua--GUUGCCU---UGCuaaAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 18571 0.78 0.468805
Target:  5'- uCGACGUCAcGCcGAGCGcgUucUCGGCGCg -3'
miRNA:   3'- -GCUGUAGU-UGcCUUGCuaA--AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 50890 0.67 0.968495
Target:  5'- aCGGCcAUCGcacucCGGAugcGCGA--UCGGUGCa -3'
miRNA:   3'- -GCUG-UAGUu----GCCU---UGCUaaAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 8300 0.71 0.845016
Target:  5'- gCGACAUCAggaaGCGGAGgccUGGggUUCGGCa- -3'
miRNA:   3'- -GCUGUAGU----UGCCUU---GCUa-AAGCCGcg -5'
24920 5' -48.7 NC_005284.1 + 5963 0.72 0.766906
Target:  5'- uCGACGUaauCGGAAgcCGAUUgcguugCGGCGCc -3'
miRNA:   3'- -GCUGUAguuGCCUU--GCUAAa-----GCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 45396 0.74 0.679391
Target:  5'- uGugAUCGGCGuGACGAUaa-GGCGCa -3'
miRNA:   3'- gCugUAGUUGCcUUGCUAaagCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 49508 0.66 0.974724
Target:  5'- uCGAgGUCGcCGGAuGCGAUUUCGuCGa -3'
miRNA:   3'- -GCUgUAGUuGCCU-UGCUAAAGCcGCg -5'
24920 5' -48.7 NC_005284.1 + 29914 0.66 0.974724
Target:  5'- uGAcCGUCGACGGuugcccauGCaGUUcagugcacUCGGCGCa -3'
miRNA:   3'- gCU-GUAGUUGCCu-------UGcUAA--------AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 405 0.71 0.825767
Target:  5'- gGAag-CGGCGGcgcaaauGGCGAgUUUCGGCGCa -3'
miRNA:   3'- gCUguaGUUGCC-------UUGCU-AAAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 49584 0.69 0.914717
Target:  5'- aGACGUCgGGCuGAucaGCGGUcUUCGGCGUc -3'
miRNA:   3'- gCUGUAG-UUGcCU---UGCUA-AAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 16064 0.69 0.914717
Target:  5'- uCGGCAguaagcGCGGGgggcucuucaacACGAUUcUCGGCGCc -3'
miRNA:   3'- -GCUGUagu---UGCCU------------UGCUAA-AGCCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.