Results 41 - 60 of 115 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24920 | 5' | -48.7 | NC_005284.1 | + | 25254 | 0.67 | 0.965002 |
Target: 5'- aUGACGcCAAUGaaaguccgcuccGAGCGGUUUCugaGGCGCu -3' miRNA: 3'- -GCUGUaGUUGC------------CUUGCUAAAG---CCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 47733 | 0.67 | 0.952916 |
Target: 5'- aGGCcgugcUCGGCGGuACGg---CGGCGCg -3' miRNA: 3'- gCUGu----AGUUGCCuUGCuaaaGCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 22859 | 0.67 | 0.965002 |
Target: 5'- aCGAUAggCGGCGGGAaGGgcgUCGaGCGCc -3' miRNA: 3'- -GCUGUa-GUUGCCUUgCUaa-AGC-CGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 12071 | 0.67 | 0.965002 |
Target: 5'- gCGAUGUCucagguguuCGGAGCGA--UCGGCu- -3' miRNA: 3'- -GCUGUAGuu-------GCCUUGCUaaAGCCGcg -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 47076 | 0.67 | 0.961246 |
Target: 5'- uCGACGUCuACGGGGCa---UCGG-GCa -3' miRNA: 3'- -GCUGUAGuUGCCUUGcuaaAGCCgCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 18377 | 0.67 | 0.957219 |
Target: 5'- aCGuCGUCGaaugGCGGAAgGAUaaCGGCGa -3' miRNA: 3'- -GCuGUAGU----UGCCUUgCUAaaGCCGCg -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 7691 | 0.67 | 0.961246 |
Target: 5'- nGACGUaCAGCGu-GCGcgUgagCGGUGCg -3' miRNA: 3'- gCUGUA-GUUGCcuUGCuaAa--GCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 45618 | 0.67 | 0.957219 |
Target: 5'- gGACGagGGCGGuGCGAgucuucgCGGgGCa -3' miRNA: 3'- gCUGUagUUGCCuUGCUaaa----GCCgCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 38389 | 0.67 | 0.952916 |
Target: 5'- aCGACGUCAAauuGAucaACGAUcUUCGGCugGCg -3' miRNA: 3'- -GCUGUAGUUgc-CU---UGCUA-AAGCCG--CG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 1684 | 0.73 | 0.73485 |
Target: 5'- aCGACAUCGACGG-GCGg---CGGCa- -3' miRNA: 3'- -GCUGUAGUUGCCuUGCuaaaGCCGcg -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 14156 | 0.7 | 0.893962 |
Target: 5'- aCGACGagAGCGGcAAgGAgauUUUCGGCGa -3' miRNA: 3'- -GCUGUagUUGCC-UUgCU---AAAGCCGCg -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 25641 | 0.69 | 0.901168 |
Target: 5'- uGACGUUccuAUGGAguaACGGgaaggCGGCGCa -3' miRNA: 3'- gCUGUAGu--UGCCU---UGCUaaa--GCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 9491 | 0.69 | 0.908088 |
Target: 5'- gCGACGcaGGCGGcgacAGCGugggUCGGCGCc -3' miRNA: 3'- -GCUGUagUUGCC----UUGCuaa-AGCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 51467 | 0.69 | 0.908088 |
Target: 5'- gGACGUCgAGCGauGGGCGGUgaUCGcGCGCu -3' miRNA: 3'- gCUGUAG-UUGC--CUUGCUAa-AGC-CGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 16064 | 0.69 | 0.914717 |
Target: 5'- uCGGCAguaagcGCGGGgggcucuucaacACGAUUcUCGGCGCc -3' miRNA: 3'- -GCUGUagu---UGCCU------------UGCUAA-AGCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 49584 | 0.69 | 0.914717 |
Target: 5'- aGACGUCgGGCuGAucaGCGGUcUUCGGCGUc -3' miRNA: 3'- gCUGUAG-UUGcCU---UGCUA-AAGCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 405 | 0.71 | 0.825767 |
Target: 5'- gGAag-CGGCGGcgcaaauGGCGAgUUUCGGCGCa -3' miRNA: 3'- gCUguaGUUGCC-------UUGCU-AAAGCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 10580 | 0.71 | 0.817219 |
Target: 5'- uCGGCGUCGACGaGAaaucgcGCGAgaUCGG-GCg -3' miRNA: 3'- -GCUGUAGUUGC-CU------UGCUaaAGCCgCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 37448 | 0.72 | 0.807525 |
Target: 5'- cCGGCcgCGA-GGAACaucgUCGGCGCg -3' miRNA: 3'- -GCUGuaGUUgCCUUGcuaaAGCCGCG- -5' |
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24920 | 5' | -48.7 | NC_005284.1 | + | 29842 | 0.69 | 0.919184 |
Target: 5'- gGGCAaccgUCGACGGucAagccgacgcaucucGCGAUggUCGGCGCc -3' miRNA: 3'- gCUGU----AGUUGCC--U--------------UGCUAa-AGCCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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