miRNA display CGI


Results 41 - 60 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24920 5' -48.7 NC_005284.1 + 25254 0.67 0.965002
Target:  5'- aUGACGcCAAUGaaaguccgcuccGAGCGGUUUCugaGGCGCu -3'
miRNA:   3'- -GCUGUaGUUGC------------CUUGCUAAAG---CCGCG- -5'
24920 5' -48.7 NC_005284.1 + 47733 0.67 0.952916
Target:  5'- aGGCcgugcUCGGCGGuACGg---CGGCGCg -3'
miRNA:   3'- gCUGu----AGUUGCCuUGCuaaaGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 22859 0.67 0.965002
Target:  5'- aCGAUAggCGGCGGGAaGGgcgUCGaGCGCc -3'
miRNA:   3'- -GCUGUa-GUUGCCUUgCUaa-AGC-CGCG- -5'
24920 5' -48.7 NC_005284.1 + 12071 0.67 0.965002
Target:  5'- gCGAUGUCucagguguuCGGAGCGA--UCGGCu- -3'
miRNA:   3'- -GCUGUAGuu-------GCCUUGCUaaAGCCGcg -5'
24920 5' -48.7 NC_005284.1 + 47076 0.67 0.961246
Target:  5'- uCGACGUCuACGGGGCa---UCGG-GCa -3'
miRNA:   3'- -GCUGUAGuUGCCUUGcuaaAGCCgCG- -5'
24920 5' -48.7 NC_005284.1 + 18377 0.67 0.957219
Target:  5'- aCGuCGUCGaaugGCGGAAgGAUaaCGGCGa -3'
miRNA:   3'- -GCuGUAGU----UGCCUUgCUAaaGCCGCg -5'
24920 5' -48.7 NC_005284.1 + 7691 0.67 0.961246
Target:  5'- nGACGUaCAGCGu-GCGcgUgagCGGUGCg -3'
miRNA:   3'- gCUGUA-GUUGCcuUGCuaAa--GCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 45618 0.67 0.957219
Target:  5'- gGACGagGGCGGuGCGAgucuucgCGGgGCa -3'
miRNA:   3'- gCUGUagUUGCCuUGCUaaa----GCCgCG- -5'
24920 5' -48.7 NC_005284.1 + 38389 0.67 0.952916
Target:  5'- aCGACGUCAAauuGAucaACGAUcUUCGGCugGCg -3'
miRNA:   3'- -GCUGUAGUUgc-CU---UGCUA-AAGCCG--CG- -5'
24920 5' -48.7 NC_005284.1 + 1684 0.73 0.73485
Target:  5'- aCGACAUCGACGG-GCGg---CGGCa- -3'
miRNA:   3'- -GCUGUAGUUGCCuUGCuaaaGCCGcg -5'
24920 5' -48.7 NC_005284.1 + 14156 0.7 0.893962
Target:  5'- aCGACGagAGCGGcAAgGAgauUUUCGGCGa -3'
miRNA:   3'- -GCUGUagUUGCC-UUgCU---AAAGCCGCg -5'
24920 5' -48.7 NC_005284.1 + 25641 0.69 0.901168
Target:  5'- uGACGUUccuAUGGAguaACGGgaaggCGGCGCa -3'
miRNA:   3'- gCUGUAGu--UGCCU---UGCUaaa--GCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 9491 0.69 0.908088
Target:  5'- gCGACGcaGGCGGcgacAGCGugggUCGGCGCc -3'
miRNA:   3'- -GCUGUagUUGCC----UUGCuaa-AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 51467 0.69 0.908088
Target:  5'- gGACGUCgAGCGauGGGCGGUgaUCGcGCGCu -3'
miRNA:   3'- gCUGUAG-UUGC--CUUGCUAa-AGC-CGCG- -5'
24920 5' -48.7 NC_005284.1 + 16064 0.69 0.914717
Target:  5'- uCGGCAguaagcGCGGGgggcucuucaacACGAUUcUCGGCGCc -3'
miRNA:   3'- -GCUGUagu---UGCCU------------UGCUAA-AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 49584 0.69 0.914717
Target:  5'- aGACGUCgGGCuGAucaGCGGUcUUCGGCGUc -3'
miRNA:   3'- gCUGUAG-UUGcCU---UGCUA-AAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 405 0.71 0.825767
Target:  5'- gGAag-CGGCGGcgcaaauGGCGAgUUUCGGCGCa -3'
miRNA:   3'- gCUguaGUUGCC-------UUGCU-AAAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 10580 0.71 0.817219
Target:  5'- uCGGCGUCGACGaGAaaucgcGCGAgaUCGG-GCg -3'
miRNA:   3'- -GCUGUAGUUGC-CU------UGCUaaAGCCgCG- -5'
24920 5' -48.7 NC_005284.1 + 37448 0.72 0.807525
Target:  5'- cCGGCcgCGA-GGAACaucgUCGGCGCg -3'
miRNA:   3'- -GCUGuaGUUgCCUUGcuaaAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 29842 0.69 0.919184
Target:  5'- gGGCAaccgUCGACGGucAagccgacgcaucucGCGAUggUCGGCGCc -3'
miRNA:   3'- gCUGU----AGUUGCC--U--------------UGCUAa-AGCCGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.