miRNA display CGI


Results 61 - 80 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24920 5' -48.7 NC_005284.1 + 10580 0.71 0.817219
Target:  5'- uCGGCGUCGACGaGAaaucgcGCGAgaUCGG-GCg -3'
miRNA:   3'- -GCUGUAGUUGC-CU------UGCUaaAGCCgCG- -5'
24920 5' -48.7 NC_005284.1 + 37448 0.72 0.807525
Target:  5'- cCGGCcgCGA-GGAACaucgUCGGCGCg -3'
miRNA:   3'- -GCUGuaGUUgCCUUGcuaaAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 52914 0.72 0.797635
Target:  5'- aCGACAUCAcguGGAACGGcag-GGCGCc -3'
miRNA:   3'- -GCUGUAGUug-CCUUGCUaaagCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 1684 0.73 0.73485
Target:  5'- aCGACAUCGACGG-GCGg---CGGCa- -3'
miRNA:   3'- -GCUGUAGUUGCCuUGCuaaaGCCGcg -5'
24920 5' -48.7 NC_005284.1 + 921 0.73 0.712908
Target:  5'- uGGCAUCGGCauguucgugcuGGAcgACGAgUUCGGUGCc -3'
miRNA:   3'- gCUGUAGUUG-----------CCU--UGCUaAAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 9491 0.69 0.908088
Target:  5'- gCGACGcaGGCGGcgacAGCGugggUCGGCGCc -3'
miRNA:   3'- -GCUGUagUUGCC----UUGCuaa-AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 51467 0.69 0.908088
Target:  5'- gGACGUCgAGCGauGGGCGGUgaUCGcGCGCu -3'
miRNA:   3'- gCUGUAG-UUGC--CUUGCUAa-AGC-CGCG- -5'
24920 5' -48.7 NC_005284.1 + 38389 0.67 0.952916
Target:  5'- aCGACGUCAAauuGAucaACGAUcUUCGGCugGCg -3'
miRNA:   3'- -GCUGUAGUUgc-CU---UGCUA-AAGCCG--CG- -5'
24920 5' -48.7 NC_005284.1 + 12042 0.68 0.948331
Target:  5'- cCGACcUCGcGCGGu----UUUCGGCGCg -3'
miRNA:   3'- -GCUGuAGU-UGCCuugcuAAAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 45153 0.68 0.948331
Target:  5'- gCGugGUCGACGcacGGCGAcgUCGG-GCa -3'
miRNA:   3'- -GCugUAGUUGCc--UUGCUaaAGCCgCG- -5'
24920 5' -48.7 NC_005284.1 + 22896 0.68 0.948331
Target:  5'- uGAuCAUUuucaguUGGGACGAUg-CGGCGCa -3'
miRNA:   3'- gCU-GUAGuu----GCCUUGCUAaaGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 16161 0.68 0.948331
Target:  5'- -cACAUC-GCuGAugGGgcUCGGCGCg -3'
miRNA:   3'- gcUGUAGuUGcCUugCUaaAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 15837 0.68 0.948331
Target:  5'- aCGGCAcgcUCGGCGu-GCG-UUUCGGaCGCa -3'
miRNA:   3'- -GCUGU---AGUUGCcuUGCuAAAGCC-GCG- -5'
24920 5' -48.7 NC_005284.1 + 3419 0.68 0.948331
Target:  5'- uGGCAaugCAGCGGuguuGACGGUUcagUCGGCa- -3'
miRNA:   3'- gCUGUa--GUUGCC----UUGCUAA---AGCCGcg -5'
24920 5' -48.7 NC_005284.1 + 46506 0.68 0.94346
Target:  5'- cCGACGcCGcACGGGACGGa--UGGUGCg -3'
miRNA:   3'- -GCUGUaGU-UGCCUUGCUaaaGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 12110 0.68 0.94346
Target:  5'- gGAU-UCGGCGGugucucUGAUgccgUCGGCGCg -3'
miRNA:   3'- gCUGuAGUUGCCuu----GCUAa---AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 11611 0.68 0.94346
Target:  5'- cCGAgCGUCAGCGuGAcgugcagcGCGAacUCGGgGCg -3'
miRNA:   3'- -GCU-GUAGUUGC-CU--------UGCUaaAGCCgCG- -5'
24920 5' -48.7 NC_005284.1 + 29842 0.69 0.919184
Target:  5'- gGGCAaccgUCGACGGucAagccgacgcaucucGCGAUggUCGGCGCc -3'
miRNA:   3'- gCUGU----AGUUGCC--U--------------UGCUAa-AGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 49584 0.69 0.914717
Target:  5'- aGACGUCgGGCuGAucaGCGGUcUUCGGCGUc -3'
miRNA:   3'- gCUGUAG-UUGcCU---UGCUA-AAGCCGCG- -5'
24920 5' -48.7 NC_005284.1 + 16064 0.69 0.914717
Target:  5'- uCGGCAguaagcGCGGGgggcucuucaacACGAUUcUCGGCGCc -3'
miRNA:   3'- -GCUGUagu---UGCCU------------UGCUAA-AGCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.