Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24922 | 3' | -58.4 | NC_005284.1 | + | 48206 | 0.66 | 0.535543 |
Target: 5'- cGCGCAGCGGCCacgcguacgugucuGuCAUGuGGCGc -3' miRNA: 3'- aUGCGUCGCCGGcuu-----------CuGUAC-CCGCu -5' |
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24922 | 3' | -58.4 | NC_005284.1 | + | 42031 | 0.66 | 0.528176 |
Target: 5'- aGCGCGuGcCGGCCGAGcGGCAUGGa--- -3' miRNA: 3'- aUGCGU-C-GCCGGCUU-CUGUACCcgcu -5' |
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24922 | 3' | -58.4 | NC_005284.1 | + | 11245 | 0.66 | 0.528176 |
Target: 5'- cGCGCGGCGGCCGc------GGcGCGAg -3' miRNA: 3'- aUGCGUCGCCGGCuucuguaCC-CGCU- -5' |
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24922 | 3' | -58.4 | NC_005284.1 | + | 10097 | 0.66 | 0.517718 |
Target: 5'- -cCGCGGCGGguCUGAAGAC---GGCGAc -3' miRNA: 3'- auGCGUCGCC--GGCUUCUGuacCCGCU- -5' |
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24922 | 3' | -58.4 | NC_005284.1 | + | 25806 | 0.66 | 0.507344 |
Target: 5'- aGCGcCAGUGGCaagaGAAGA--UGGGCa- -3' miRNA: 3'- aUGC-GUCGCCGg---CUUCUguACCCGcu -5' |
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24922 | 3' | -58.4 | NC_005284.1 | + | 9493 | 0.66 | 0.497059 |
Target: 5'- gACGCAgGCGG-CGAcaGCGUGGGuCGGc -3' miRNA: 3'- aUGCGU-CGCCgGCUucUGUACCC-GCU- -5' |
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24922 | 3' | -58.4 | NC_005284.1 | + | 19026 | 0.66 | 0.497059 |
Target: 5'- cAgGCGGCGaucGCCGAGGGCGauauGGCGGu -3' miRNA: 3'- aUgCGUCGC---CGGCUUCUGUac--CCGCU- -5' |
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24922 | 3' | -58.4 | NC_005284.1 | + | 11586 | 0.66 | 0.487884 |
Target: 5'- gACGCGgagcucggcgacuacGCGGCCGAGcgucagcguGACGUgcagcgcgaacucgGGGCGAu -3' miRNA: 3'- aUGCGU---------------CGCCGGCUU---------CUGUA--------------CCCGCU- -5' |
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24922 | 3' | -58.4 | NC_005284.1 | + | 16175 | 0.67 | 0.466793 |
Target: 5'- gGCuCGGCGcGUCGAuGGCGcUGGGCGGc -3' miRNA: 3'- aUGcGUCGC-CGGCUuCUGU-ACCCGCU- -5' |
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24922 | 3' | -58.4 | NC_005284.1 | + | 47769 | 0.67 | 0.456917 |
Target: 5'- cGCGUaagcagaucgaGGCGGCgcucgCGGAGGCGacGGGCGAg -3' miRNA: 3'- aUGCG-----------UCGCCG-----GCUUCUGUa-CCCGCU- -5' |
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24922 | 3' | -58.4 | NC_005284.1 | + | 19802 | 0.67 | 0.456917 |
Target: 5'- aGCGCGGCGGCagaucucucgcgCGggGAaccguucUGGGCa- -3' miRNA: 3'- aUGCGUCGCCG------------GCuuCUgu-----ACCCGcu -5' |
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24922 | 3' | -58.4 | NC_005284.1 | + | 10428 | 0.67 | 0.456917 |
Target: 5'- cGCGCAGuCGGCauaucggaauuUGgcGACGcGGGCGGc -3' miRNA: 3'- aUGCGUC-GCCG-----------GCuuCUGUaCCCGCU- -5' |
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24922 | 3' | -58.4 | NC_005284.1 | + | 11258 | 0.67 | 0.456917 |
Target: 5'- cGCgGCAGCGGCucgcgcggCGAAGGg--GGGCGGu -3' miRNA: 3'- aUG-CGUCGCCG--------GCUUCUguaCCCGCU- -5' |
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24922 | 3' | -58.4 | NC_005284.1 | + | 11927 | 0.67 | 0.447154 |
Target: 5'- aGCGCAGaUGGCCGAGGA----GGCGc -3' miRNA: 3'- aUGCGUC-GCCGGCUUCUguacCCGCu -5' |
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24922 | 3' | -58.4 | NC_005284.1 | + | 8248 | 0.67 | 0.437508 |
Target: 5'- cGCGCuGCGGCuCGGcaAGACGUuGGcCGAg -3' miRNA: 3'- aUGCGuCGCCG-GCU--UCUGUAcCC-GCU- -5' |
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24922 | 3' | -58.4 | NC_005284.1 | + | 14516 | 0.67 | 0.43655 |
Target: 5'- cGCGCAGCaGCCaucGccGACGcugcgggUGGGCGAc -3' miRNA: 3'- aUGCGUCGcCGG---CuuCUGU-------ACCCGCU- -5' |
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24922 | 3' | -58.4 | NC_005284.1 | + | 40608 | 0.67 | 0.427983 |
Target: 5'- cACGCgAGCaGCCGAGGAauugaAUGuGGCGc -3' miRNA: 3'- aUGCG-UCGcCGGCUUCUg----UAC-CCGCu -5' |
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24922 | 3' | -58.4 | NC_005284.1 | + | 26400 | 0.68 | 0.418581 |
Target: 5'- aGCGUGGCuGcGCCGcuucGAgGUGGGCGAc -3' miRNA: 3'- aUGCGUCG-C-CGGCuu--CUgUACCCGCU- -5' |
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24922 | 3' | -58.4 | NC_005284.1 | + | 13329 | 0.68 | 0.418581 |
Target: 5'- --aGC-GCGGUCGAAuGAUGUGGGaCGAg -3' miRNA: 3'- augCGuCGCCGGCUU-CUGUACCC-GCU- -5' |
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24922 | 3' | -58.4 | NC_005284.1 | + | 21972 | 0.68 | 0.40016 |
Target: 5'- gUGCGCAGUccGGCCuAAGACuccGGGCu- -3' miRNA: 3'- -AUGCGUCG--CCGGcUUCUGua-CCCGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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