miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24922 3' -58.4 NC_005284.1 + 8248 0.67 0.437508
Target:  5'- cGCGCuGCGGCuCGGcaAGACGUuGGcCGAg -3'
miRNA:   3'- aUGCGuCGCCG-GCU--UCUGUAcCC-GCU- -5'
24922 3' -58.4 NC_005284.1 + 9493 0.66 0.497059
Target:  5'- gACGCAgGCGG-CGAcaGCGUGGGuCGGc -3'
miRNA:   3'- aUGCGU-CGCCgGCUucUGUACCC-GCU- -5'
24922 3' -58.4 NC_005284.1 + 10097 0.66 0.517718
Target:  5'- -cCGCGGCGGguCUGAAGAC---GGCGAc -3'
miRNA:   3'- auGCGUCGCC--GGCUUCUGuacCCGCU- -5'
24922 3' -58.4 NC_005284.1 + 10428 0.67 0.456917
Target:  5'- cGCGCAGuCGGCauaucggaauuUGgcGACGcGGGCGGc -3'
miRNA:   3'- aUGCGUC-GCCG-----------GCuuCUGUaCCCGCU- -5'
24922 3' -58.4 NC_005284.1 + 11245 0.66 0.528176
Target:  5'- cGCGCGGCGGCCGc------GGcGCGAg -3'
miRNA:   3'- aUGCGUCGCCGGCuucuguaCC-CGCU- -5'
24922 3' -58.4 NC_005284.1 + 11258 0.67 0.456917
Target:  5'- cGCgGCAGCGGCucgcgcggCGAAGGg--GGGCGGu -3'
miRNA:   3'- aUG-CGUCGCCG--------GCUUCUguaCCCGCU- -5'
24922 3' -58.4 NC_005284.1 + 11586 0.66 0.487884
Target:  5'- gACGCGgagcucggcgacuacGCGGCCGAGcgucagcguGACGUgcagcgcgaacucgGGGCGAu -3'
miRNA:   3'- aUGCGU---------------CGCCGGCUU---------CUGUA--------------CCCGCU- -5'
24922 3' -58.4 NC_005284.1 + 11927 0.67 0.447154
Target:  5'- aGCGCAGaUGGCCGAGGA----GGCGc -3'
miRNA:   3'- aUGCGUC-GCCGGCUUCUguacCCGCu -5'
24922 3' -58.4 NC_005284.1 + 13329 0.68 0.418581
Target:  5'- --aGC-GCGGUCGAAuGAUGUGGGaCGAg -3'
miRNA:   3'- augCGuCGCCGGCUU-CUGUACCC-GCU- -5'
24922 3' -58.4 NC_005284.1 + 14516 0.67 0.43655
Target:  5'- cGCGCAGCaGCCaucGccGACGcugcgggUGGGCGAc -3'
miRNA:   3'- aUGCGUCGcCGG---CuuCUGU-------ACCCGCU- -5'
24922 3' -58.4 NC_005284.1 + 15218 1.07 0.000614
Target:  5'- cUACGCAGCGGCCGAAGACAUGGGCGAg -3'
miRNA:   3'- -AUGCGUCGCCGGCUUCUGUACCCGCU- -5'
24922 3' -58.4 NC_005284.1 + 15316 0.71 0.252584
Target:  5'- gGCGCAGCGGCaucgcGAaAUGGGUGAu -3'
miRNA:   3'- aUGCGUCGCCGgcuu-CUgUACCCGCU- -5'
24922 3' -58.4 NC_005284.1 + 16175 0.67 0.466793
Target:  5'- gGCuCGGCGcGUCGAuGGCGcUGGGCGGc -3'
miRNA:   3'- aUGcGUCGC-CGGCUuCUGU-ACCCGCU- -5'
24922 3' -58.4 NC_005284.1 + 19026 0.66 0.497059
Target:  5'- cAgGCGGCGaucGCCGAGGGCGauauGGCGGu -3'
miRNA:   3'- aUgCGUCGC---CGGCUUCUGUac--CCGCU- -5'
24922 3' -58.4 NC_005284.1 + 19802 0.67 0.456917
Target:  5'- aGCGCGGCGGCagaucucucgcgCGggGAaccguucUGGGCa- -3'
miRNA:   3'- aUGCGUCGCCG------------GCuuCUgu-----ACCCGcu -5'
24922 3' -58.4 NC_005284.1 + 21589 0.73 0.194666
Target:  5'- cGCGCAGCGgcauGCCGAAG-CGUuGGGCa- -3'
miRNA:   3'- aUGCGUCGC----CGGCUUCuGUA-CCCGcu -5'
24922 3' -58.4 NC_005284.1 + 21833 0.74 0.174949
Target:  5'- gGCGCuuccAGC-GCCGccGGCGUGGGCGAu -3'
miRNA:   3'- aUGCG----UCGcCGGCuuCUGUACCCGCU- -5'
24922 3' -58.4 NC_005284.1 + 21972 0.68 0.40016
Target:  5'- gUGCGCAGUccGGCCuAAGACuccGGGCu- -3'
miRNA:   3'- -AUGCGUCG--CCGGcUUCUGua-CCCGcu -5'
24922 3' -58.4 NC_005284.1 + 24813 0.74 0.157029
Target:  5'- -gUGUAGCgGGCCGAAGACGcacGGGCGu -3'
miRNA:   3'- auGCGUCG-CCGGCUUCUGUa--CCCGCu -5'
24922 3' -58.4 NC_005284.1 + 25806 0.66 0.507344
Target:  5'- aGCGcCAGUGGCaagaGAAGA--UGGGCa- -3'
miRNA:   3'- aUGC-GUCGCCGg---CUUCUguACCCGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.