miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24922 5' -54.4 NC_005284.1 + 6738 0.66 0.773581
Target:  5'- --gCcgUCGCcaaaCCCGGCGCGUCu-- -3'
miRNA:   3'- caaGuaAGCGua--GGGCCGCGUAGccg -5'
24922 5' -54.4 NC_005284.1 + 45184 0.66 0.773581
Target:  5'- --gCAgcgUCGCAgcagucaaCGGCGC-UCGGCa -3'
miRNA:   3'- caaGUa--AGCGUagg-----GCCGCGuAGCCG- -5'
24922 5' -54.4 NC_005284.1 + 45407 0.66 0.771551
Target:  5'- aGUUCAgugUCGCAgucgcggCCGGCGacgauauucgCGGCg -3'
miRNA:   3'- -CAAGUa--AGCGUag-----GGCCGCgua-------GCCG- -5'
24922 5' -54.4 NC_005284.1 + 46500 0.66 0.753034
Target:  5'- gGUUCGUUCGC-UCCaucGCauuuGCAUcCGGCg -3'
miRNA:   3'- -CAAGUAAGCGuAGGgc-CG----CGUA-GCCG- -5'
24922 5' -54.4 NC_005284.1 + 41962 0.66 0.753034
Target:  5'- -aUCA-UCGcCGUCCCGGCGguCAUCaauGCa -3'
miRNA:   3'- caAGUaAGC-GUAGGGCCGC--GUAGc--CG- -5'
24922 5' -54.4 NC_005284.1 + 6783 0.66 0.742568
Target:  5'- cGUUCA--UGCGg-CCGGCGUuugaugcgucgAUCGGCg -3'
miRNA:   3'- -CAAGUaaGCGUagGGCCGCG-----------UAGCCG- -5'
24922 5' -54.4 NC_005284.1 + 17724 0.66 0.731988
Target:  5'- cGUUCGgcugcacgUCGCAggCgCaGGCGCAcCGGCu -3'
miRNA:   3'- -CAAGUa-------AGCGUa-GgG-CCGCGUaGCCG- -5'
24922 5' -54.4 NC_005284.1 + 50311 0.67 0.721307
Target:  5'- --cCGUUCGCGUCaggcugcugaaCGGCGaaugCGGCu -3'
miRNA:   3'- caaGUAAGCGUAGg----------GCCGCgua-GCCG- -5'
24922 5' -54.4 NC_005284.1 + 41688 0.67 0.710536
Target:  5'- -gUCGgagcUCGCA-CUCGGCGCGgccUCGcGCg -3'
miRNA:   3'- caAGUa---AGCGUaGGGCCGCGU---AGC-CG- -5'
24922 5' -54.4 NC_005284.1 + 31527 0.67 0.699687
Target:  5'- -gUCAaUUGgGggCCCGGCGCGccgcagCGGCg -3'
miRNA:   3'- caAGUaAGCgUa-GGGCCGCGUa-----GCCG- -5'
24922 5' -54.4 NC_005284.1 + 28997 0.67 0.696419
Target:  5'- -cUCAagcaUUGCGUUCCGgauugcagaaaaauGCGCGUCGGUg -3'
miRNA:   3'- caAGUa---AGCGUAGGGC--------------CGCGUAGCCG- -5'
24922 5' -54.4 NC_005284.1 + 50810 0.67 0.688772
Target:  5'- -aUCg--CGCAUCCCGGaguGCGaUGGCc -3'
miRNA:   3'- caAGuaaGCGUAGGGCCg--CGUaGCCG- -5'
24922 5' -54.4 NC_005284.1 + 48968 0.67 0.688772
Target:  5'- --aCAccUUCGCcgCCgGGCGUGUccaCGGCg -3'
miRNA:   3'- caaGU--AAGCGuaGGgCCGCGUA---GCCG- -5'
24922 5' -54.4 NC_005284.1 + 46315 0.68 0.655739
Target:  5'- cGUcCAUUcCGCAUCCCaccCGCGgUCGGCc -3'
miRNA:   3'- -CAaGUAA-GCGUAGGGcc-GCGU-AGCCG- -5'
24922 5' -54.4 NC_005284.1 + 47071 0.68 0.655739
Target:  5'- -cUCAaUCGaCGUCUaCGGgGCAUCGGg -3'
miRNA:   3'- caAGUaAGC-GUAGG-GCCgCGUAGCCg -5'
24922 5' -54.4 NC_005284.1 + 45562 0.68 0.611431
Target:  5'- --gCGUggCGCGUCgCCcGCGCAcUCGGCu -3'
miRNA:   3'- caaGUAa-GCGUAG-GGcCGCGU-AGCCG- -5'
24922 5' -54.4 NC_005284.1 + 37176 0.69 0.578355
Target:  5'- -aUCGUgCGCGacgcccugaaucUCgCCGGCGCGUCgauGGCg -3'
miRNA:   3'- caAGUAaGCGU------------AG-GGCCGCGUAG---CCG- -5'
24922 5' -54.4 NC_005284.1 + 16792 0.7 0.534919
Target:  5'- -aUUuggCGCAcCCaCGGCGCGUCGGa -3'
miRNA:   3'- caAGuaaGCGUaGG-GCCGCGUAGCCg -5'
24922 5' -54.4 NC_005284.1 + 37894 0.7 0.534919
Target:  5'- --aCAUUCcgGCGUUCCgGGCGCGU-GGCg -3'
miRNA:   3'- caaGUAAG--CGUAGGG-CCGCGUAgCCG- -5'
24922 5' -54.4 NC_005284.1 + 30779 0.7 0.52423
Target:  5'- ------aCGCGUCCauuaugcaGaGCGCGUCGGCa -3'
miRNA:   3'- caaguaaGCGUAGGg-------C-CGCGUAGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.