miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24924 3' -57.3 NC_005284.1 + 14039 0.66 0.653798
Target:  5'- aCaAUCCGGaAGCG-GGGCGGCagGCUg -3'
miRNA:   3'- gGcUAGGUC-UUGCgCCUGCCGagCGA- -5'
24924 3' -57.3 NC_005284.1 + 36001 0.66 0.653798
Target:  5'- uCCGAUCCGacucaucgcacGAGCaCGGGCGGUacUgGCg -3'
miRNA:   3'- -GGCUAGGU-----------CUUGcGCCUGCCG--AgCGa -5'
24924 3' -57.3 NC_005284.1 + 43278 0.66 0.621599
Target:  5'- cUCGAgg-AGGuCGCGGACGGCcUGCUg -3'
miRNA:   3'- -GGCUaggUCUuGCGCCUGCCGaGCGA- -5'
24924 3' -57.3 NC_005284.1 + 18058 0.66 0.610871
Target:  5'- gCCGAUCC-GGugGCGGGC-GCUgUGUg -3'
miRNA:   3'- -GGCUAGGuCUugCGCCUGcCGA-GCGa -5'
24924 3' -57.3 NC_005284.1 + 47452 0.67 0.600162
Target:  5'- gCCGAUcaaCCGGGcCGagaaGAUGGCUCGCa -3'
miRNA:   3'- -GGCUA---GGUCUuGCgc--CUGCCGAGCGa -5'
24924 3' -57.3 NC_005284.1 + 9974 0.67 0.589478
Target:  5'- aCGAUCgCAaAGCGCGuuauACGGCgUCGCUg -3'
miRNA:   3'- gGCUAG-GUcUUGCGCc---UGCCG-AGCGA- -5'
24924 3' -57.3 NC_005284.1 + 50629 0.67 0.578828
Target:  5'- -gGGUUgAGAuucCGGACGGCUCGUa -3'
miRNA:   3'- ggCUAGgUCUugcGCCUGCCGAGCGa -5'
24924 3' -57.3 NC_005284.1 + 48323 0.67 0.56822
Target:  5'- gCGcuAUCCGGAAgGCGG-CGGCgagaugauucUCGCg -3'
miRNA:   3'- gGC--UAGGUCUUgCGCCuGCCG----------AGCGa -5'
24924 3' -57.3 NC_005284.1 + 13967 0.67 0.556609
Target:  5'- uCCGAcUCAGGACGCucgaaaaagugauGGcGCGGCUgCGCg -3'
miRNA:   3'- -GGCUaGGUCUUGCG-------------CC-UGCCGA-GCGa -5'
24924 3' -57.3 NC_005284.1 + 19242 0.67 0.54716
Target:  5'- gCCGAUCUgaacGGACGCGucGCGGCgUCGUa -3'
miRNA:   3'- -GGCUAGGu---CUUGCGCc-UGCCG-AGCGa -5'
24924 3' -57.3 NC_005284.1 + 33376 0.68 0.536722
Target:  5'- gUCGG-CCGGcGCuGCcGACGGCUCGCc -3'
miRNA:   3'- -GGCUaGGUCuUG-CGcCUGCCGAGCGa -5'
24924 3' -57.3 NC_005284.1 + 31604 0.68 0.516062
Target:  5'- aCGAuuugcUCCcuuGggUGCGGGCGGCgucgagggCGCa -3'
miRNA:   3'- gGCU-----AGGu--CuuGCGCCUGCCGa-------GCGa -5'
24924 3' -57.3 NC_005284.1 + 52988 0.68 0.485699
Target:  5'- gCCGAggCAau-CGCGGugGGCaUCGCg -3'
miRNA:   3'- -GGCUagGUcuuGCGCCugCCG-AGCGa -5'
24924 3' -57.3 NC_005284.1 + 31783 0.7 0.418456
Target:  5'- uCCGucaccUCGGAGCGCGGcucCGGCUgGCUc -3'
miRNA:   3'- -GGCua---GGUCUUGCGCCu--GCCGAgCGA- -5'
24924 3' -57.3 NC_005284.1 + 30867 0.7 0.409317
Target:  5'- aCGAUCCGGAcuauCGuCGGugcgaucgcAUGGCUCGCc -3'
miRNA:   3'- gGCUAGGUCUu---GC-GCC---------UGCCGAGCGa -5'
24924 3' -57.3 NC_005284.1 + 24559 0.7 0.391417
Target:  5'- uCCGG-CCAGAccgACGCcGACGGCUacaCGCa -3'
miRNA:   3'- -GGCUaGGUCU---UGCGcCUGCCGA---GCGa -5'
24924 3' -57.3 NC_005284.1 + 534 0.7 0.382661
Target:  5'- gCCGA-CCAG-GCGCuGcCGGCUCGCc -3'
miRNA:   3'- -GGCUaGGUCuUGCGcCuGCCGAGCGa -5'
24924 3' -57.3 NC_005284.1 + 694 0.71 0.357184
Target:  5'- uUCGAUCCGGAG-GCGGccgaGCGaaaGCUCGCa -3'
miRNA:   3'- -GGCUAGGUCUUgCGCC----UGC---CGAGCGa -5'
24924 3' -57.3 NC_005284.1 + 11805 0.72 0.328218
Target:  5'- gCCGAggCGGAgcaggucgcgcgcgaGCGCGGcuaucucgagcaGCGGCUCGCg -3'
miRNA:   3'- -GGCUagGUCU---------------UGCGCC------------UGCCGAGCGa -5'
24924 3' -57.3 NC_005284.1 + 12343 0.73 0.267521
Target:  5'- gCGAUCCGGcuucGCGCgauucgccgcgGGugGGCUCGUUg -3'
miRNA:   3'- gGCUAGGUCu---UGCG-----------CCugCCGAGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.