miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24924 5' -53 NC_005284.1 + 10198 0.66 0.859145
Target:  5'- ---uCUGCGCCGUCGcCGCGCuuucGGucGCCg -3'
miRNA:   3'- ucuuGAUGUGGCAGUcGCGCG----CU--UGG- -5'
24924 5' -53 NC_005284.1 + 51563 0.66 0.859145
Target:  5'- --cAUUugACCaa-AGCGCGCGAucACCg -3'
miRNA:   3'- ucuUGAugUGGcagUCGCGCGCU--UGG- -5'
24924 5' -53 NC_005284.1 + 48246 0.66 0.859145
Target:  5'- -aGACUGaCGCUGaCGGCGCGUu-GCCg -3'
miRNA:   3'- ucUUGAU-GUGGCaGUCGCGCGcuUGG- -5'
24924 5' -53 NC_005284.1 + 20800 0.66 0.859145
Target:  5'- uGAGCUACGCgggaagcauagCGUCGGuCGCGuCGucgcuuacguuGACCg -3'
miRNA:   3'- uCUUGAUGUG-----------GCAGUC-GCGC-GC-----------UUGG- -5'
24924 5' -53 NC_005284.1 + 30377 0.66 0.850677
Target:  5'- cGAGCauagccgGCcucaACCGUau-CGCGCGAGCCa -3'
miRNA:   3'- uCUUGa------UG----UGGCAgucGCGCGCUUGG- -5'
24924 5' -53 NC_005284.1 + 20942 0.66 0.850677
Target:  5'- cGAGCU-CGCUG-CAcGcCGCGUGAACUg -3'
miRNA:   3'- uCUUGAuGUGGCaGU-C-GCGCGCUUGG- -5'
24924 5' -53 NC_005284.1 + 14231 0.66 0.850677
Target:  5'- cGAAU---GCCGUCGGUGUGCuguuGGCCg -3'
miRNA:   3'- uCUUGaugUGGCAGUCGCGCGc---UUGG- -5'
24924 5' -53 NC_005284.1 + 47786 0.66 0.850677
Target:  5'- ---uCUGCGCaCGcgAGCGCGCGuGCCc -3'
miRNA:   3'- ucuuGAUGUG-GCagUCGCGCGCuUGG- -5'
24924 5' -53 NC_005284.1 + 13100 0.66 0.848955
Target:  5'- -cGACUACACCGaaauucucguucgUCuugauGUGCGCGAcgcgguuguugucGCCg -3'
miRNA:   3'- ucUUGAUGUGGC-------------AGu----CGCGCGCU-------------UGG- -5'
24924 5' -53 NC_005284.1 + 35644 0.66 0.848091
Target:  5'- cGuACUGCgucagguucacgauGCCGUUcGCGCGCGGugUc -3'
miRNA:   3'- uCuUGAUG--------------UGGCAGuCGCGCGCUugG- -5'
24924 5' -53 NC_005284.1 + 50093 0.66 0.841976
Target:  5'- uGAGCaagcagcggUACGUCGUgGG-GCGCGAGCCu -3'
miRNA:   3'- uCUUG---------AUGUGGCAgUCgCGCGCUUGG- -5'
24924 5' -53 NC_005284.1 + 16795 0.66 0.841976
Target:  5'- uGGAUUuggcGCACCcaCGGCGCGuCGGACg -3'
miRNA:   3'- uCUUGA----UGUGGcaGUCGCGC-GCUUGg -5'
24924 5' -53 NC_005284.1 + 23256 0.66 0.841976
Target:  5'- cGAugcGCUACagaACgCGUUuaaGGCGCGCGGuGCCg -3'
miRNA:   3'- uCU---UGAUG---UG-GCAG---UCGCGCGCU-UGG- -5'
24924 5' -53 NC_005284.1 + 1707 0.66 0.841976
Target:  5'- cGAGCUugcGCGCCauGUCga-GCGCGAGCa -3'
miRNA:   3'- uCUUGA---UGUGG--CAGucgCGCGCUUGg -5'
24924 5' -53 NC_005284.1 + 1091 0.66 0.833049
Target:  5'- cGAGCgcuuCACCaUCAGCcGCGcCGGGCg -3'
miRNA:   3'- uCUUGau--GUGGcAGUCG-CGC-GCUUGg -5'
24924 5' -53 NC_005284.1 + 35140 0.66 0.827588
Target:  5'- cGGAugUGCGCCcgGUCGGCuccguuguaugccguGUGCGAucgcggcgcACCu -3'
miRNA:   3'- -UCUugAUGUGG--CAGUCG---------------CGCGCU---------UGG- -5'
24924 5' -53 NC_005284.1 + 34971 0.66 0.82483
Target:  5'- cGAGCU-CGCUGUCGGCGauguuguguucuacgGCGAugucgaGCCg -3'
miRNA:   3'- uCUUGAuGUGGCAGUCGCg--------------CGCU------UGG- -5'
24924 5' -53 NC_005284.1 + 16221 0.66 0.823906
Target:  5'- cGAugUGC-CCcaCGGCuGCGCGAAaCCg -3'
miRNA:   3'- uCUugAUGuGGcaGUCG-CGCGCUU-GG- -5'
24924 5' -53 NC_005284.1 + 33298 0.66 0.823906
Target:  5'- cGAACaGCGCCGUguGCuugucgaagugGCGCagauguucaaggGAACCg -3'
miRNA:   3'- uCUUGaUGUGGCAguCG-----------CGCG------------CUUGG- -5'
24924 5' -53 NC_005284.1 + 7303 0.66 0.823906
Target:  5'- aAGAGCaagcGCACCaa-GGCGCaGgGAACCa -3'
miRNA:   3'- -UCUUGa---UGUGGcagUCGCG-CgCUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.