miRNA display CGI


Results 21 - 40 of 146 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24925 3' -57.9 NC_005284.1 + 22054 0.66 0.552998
Target:  5'- aGC-CCGgAgucUUAgGCCGGACuGCGCACAc -3'
miRNA:   3'- -CGcGGCgU---AGUgCGGCUUG-CGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 48251 0.66 0.552998
Target:  5'- cCGCaacggGCGUCAcuuCGCC-AGCGCGCGCc -3'
miRNA:   3'- cGCGg----CGUAGU---GCGGcUUGCGCGUGu -5'
24925 3' -57.9 NC_005284.1 + 23265 0.66 0.552998
Target:  5'- cGCaGCUGCAgccaUCACacgaGCgGAACGCGcCGCGa -3'
miRNA:   3'- -CG-CGGCGU----AGUG----CGgCUUGCGC-GUGU- -5'
24925 3' -57.9 NC_005284.1 + 25540 0.66 0.552998
Target:  5'- cGUGCgCGCGUCGCuCUauuuuGAGCGUGCAUu -3'
miRNA:   3'- -CGCG-GCGUAGUGcGG-----CUUGCGCGUGu -5'
24925 3' -57.9 NC_005284.1 + 48830 0.67 0.542465
Target:  5'- uCGCgGCG-CACGCCGcGCGgGUugAu -3'
miRNA:   3'- cGCGgCGUaGUGCGGCuUGCgCGugU- -5'
24925 3' -57.9 NC_005284.1 + 43604 0.67 0.542465
Target:  5'- cGCGCUaucgGCAUCGaaucacagcaGCCGAucuAUGCGCugGa -3'
miRNA:   3'- -CGCGG----CGUAGUg---------CGGCU---UGCGCGugU- -5'
24925 3' -57.9 NC_005284.1 + 31581 0.67 0.542465
Target:  5'- uGCGaCCacuGUUAUGCCGAG-GCGCGCAa -3'
miRNA:   3'- -CGC-GGcg-UAGUGCGGCUUgCGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 51789 0.67 0.541415
Target:  5'- cGCGCUuguaugucauaugGC-UCGCGCCGAAacUGCGCuCGa -3'
miRNA:   3'- -CGCGG-------------CGuAGUGCGGCUU--GCGCGuGU- -5'
24925 3' -57.9 NC_005284.1 + 21514 0.67 0.532
Target:  5'- gGCgGCCgGCGcUUGCGUCGAGCaccugaucgGCGCACAu -3'
miRNA:   3'- -CG-CGG-CGU-AGUGCGGCUUG---------CGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 9134 0.67 0.532
Target:  5'- uUGCCGgGUguCGCgGAugcuauCGCGCGCGg -3'
miRNA:   3'- cGCGGCgUAguGCGgCUu-----GCGCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 38665 0.67 0.532
Target:  5'- uCGCCGCGUgCGCucgGCCGAACG-GC-CGu -3'
miRNA:   3'- cGCGGCGUA-GUG---CGGCUUGCgCGuGU- -5'
24925 3' -57.9 NC_005284.1 + 42107 0.67 0.532
Target:  5'- aUGCCGC-UCG-GCCGGcACGCGCucGCGa -3'
miRNA:   3'- cGCGGCGuAGUgCGGCU-UGCGCG--UGU- -5'
24925 3' -57.9 NC_005284.1 + 4715 0.67 0.529915
Target:  5'- uGCuGCCGC-UCACGCCGcugccgaccguCGCagGCACGu -3'
miRNA:   3'- -CG-CGGCGuAGUGCGGCuu---------GCG--CGUGU- -5'
24925 3' -57.9 NC_005284.1 + 39420 0.67 0.521608
Target:  5'- cGCGCUGCcaagCAUG-CGAGCGUGCuGCGc -3'
miRNA:   3'- -CGCGGCGua--GUGCgGCUUGCGCG-UGU- -5'
24925 3' -57.9 NC_005284.1 + 12129 0.67 0.521608
Target:  5'- aUGCCGUcggCGCGCuCGGugGUGCgGCAa -3'
miRNA:   3'- cGCGGCGua-GUGCG-GCUugCGCG-UGU- -5'
24925 3' -57.9 NC_005284.1 + 9238 0.67 0.521608
Target:  5'- gGCGCUGaCGcgCGCGgCGGGCG-GCACGg -3'
miRNA:   3'- -CGCGGC-GUa-GUGCgGCUUGCgCGUGU- -5'
24925 3' -57.9 NC_005284.1 + 9599 0.67 0.521608
Target:  5'- cGCGCUGCcgCgGCGgCGAagcuucagaACGCGCAa- -3'
miRNA:   3'- -CGCGGCGuaG-UGCgGCU---------UGCGCGUgu -5'
24925 3' -57.9 NC_005284.1 + 9880 0.67 0.521608
Target:  5'- gGCaGCCGCAcagCAggaGCuCGAGCGCGC-CGa -3'
miRNA:   3'- -CG-CGGCGUa--GUg--CG-GCUUGCGCGuGU- -5'
24925 3' -57.9 NC_005284.1 + 49345 0.67 0.521608
Target:  5'- cGCGCUuCGUCACGUCGccuccugauCGCGCGgGa -3'
miRNA:   3'- -CGCGGcGUAGUGCGGCuu-------GCGCGUgU- -5'
24925 3' -57.9 NC_005284.1 + 45503 0.67 0.521608
Target:  5'- aCGCCGCGaauaUCGuCGCCGGcCGCGacuGCGa -3'
miRNA:   3'- cGCGGCGU----AGU-GCGGCUuGCGCg--UGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.