miRNA display CGI


Results 21 - 40 of 96 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24925 5' -55.5 NC_005284.1 + 46130 0.67 0.682635
Target:  5'- --gGCCGGaGCGcUUGcCGUCGAGGCc -3'
miRNA:   3'- uagCGGCUgCGCuAGUuGCAGCUCCG- -5'
24925 5' -55.5 NC_005284.1 + 32798 0.67 0.682635
Target:  5'- cGUCgGCCuGCGCGGguugcggggCGGCGUCGGuuacGGCa -3'
miRNA:   3'- -UAG-CGGcUGCGCUa--------GUUGCAGCU----CCG- -5'
24925 5' -55.5 NC_005284.1 + 41370 0.67 0.682635
Target:  5'- gAUCGCCGAgacacgccCGCGGUCAcgAUGUuucgCGAguGGCu -3'
miRNA:   3'- -UAGCGGCU--------GCGCUAGU--UGCA----GCU--CCG- -5'
24925 5' -55.5 NC_005284.1 + 21622 0.67 0.682635
Target:  5'- cUCGCgCGcCGCGcUCGACGcCGAGcaGCg -3'
miRNA:   3'- uAGCG-GCuGCGCuAGUUGCaGCUC--CG- -5'
24925 5' -55.5 NC_005284.1 + 22864 0.67 0.682635
Target:  5'- --aGgCGGCGgGAagGGCGUCGAGcGCc -3'
miRNA:   3'- uagCgGCUGCgCUagUUGCAGCUC-CG- -5'
24925 5' -55.5 NC_005284.1 + 52970 0.67 0.671795
Target:  5'- -cUGCCGAUGCu-UCGAguUGcCGAGGCa -3'
miRNA:   3'- uaGCGGCUGCGcuAGUU--GCaGCUCCG- -5'
24925 5' -55.5 NC_005284.1 + 37446 0.67 0.671795
Target:  5'- --aGCCGGcCGCGAggaacaucgUCGGCG-CGAGGa -3'
miRNA:   3'- uagCGGCU-GCGCU---------AGUUGCaGCUCCg -5'
24925 5' -55.5 NC_005284.1 + 24460 0.67 0.671795
Target:  5'- aAUUGCCGccaGCGGUCccuGAUGUaGGGGCa -3'
miRNA:   3'- -UAGCGGCug-CGCUAG---UUGCAgCUCCG- -5'
24925 5' -55.5 NC_005284.1 + 33441 0.67 0.671795
Target:  5'- -gCGCCGGC-CGAcgAACGggcggugucguUCGAGGCg -3'
miRNA:   3'- uaGCGGCUGcGCUagUUGC-----------AGCUCCG- -5'
24925 5' -55.5 NC_005284.1 + 8804 0.67 0.660917
Target:  5'- uUCGCgGAucgaacUGCGcgCcGCGUCGAGcGCg -3'
miRNA:   3'- uAGCGgCU------GCGCuaGuUGCAGCUC-CG- -5'
24925 5' -55.5 NC_005284.1 + 8635 0.67 0.660917
Target:  5'- uUCGCCGuaACGCugacGAUCAGCucgCGaAGGCu -3'
miRNA:   3'- uAGCGGC--UGCG----CUAGUUGca-GC-UCCG- -5'
24925 5' -55.5 NC_005284.1 + 49375 0.67 0.650012
Target:  5'- uUCGCCGAgCGCGAgcuggcGCGcCGcacGGGCa -3'
miRNA:   3'- uAGCGGCU-GCGCUagu---UGCaGC---UCCG- -5'
24925 5' -55.5 NC_005284.1 + 16756 0.67 0.650012
Target:  5'- -aCGCCGACGcCGGccUC-ACGcUCGAcGGCc -3'
miRNA:   3'- uaGCGGCUGC-GCU--AGuUGC-AGCU-CCG- -5'
24925 5' -55.5 NC_005284.1 + 6792 0.67 0.650012
Target:  5'- --gGCCGGCGUuuGAU--GCGUCGAucGGCg -3'
miRNA:   3'- uagCGGCUGCG--CUAguUGCAGCU--CCG- -5'
24925 5' -55.5 NC_005284.1 + 36422 0.67 0.639092
Target:  5'- --gGCCGGCGCGAUCGAga---AGGCg -3'
miRNA:   3'- uagCGGCUGCGCUAGUUgcagcUCCG- -5'
24925 5' -55.5 NC_005284.1 + 14514 0.67 0.639092
Target:  5'- cUUGCC-ACaCGAUCGACGUCGAcuGCa -3'
miRNA:   3'- uAGCGGcUGcGCUAGUUGCAGCUc-CG- -5'
24925 5' -55.5 NC_005284.1 + 10546 0.67 0.637999
Target:  5'- cUCGCCGGCcugGAUCGccucaagACGUCGAaccucGGCg -3'
miRNA:   3'- uAGCGGCUGcg-CUAGU-------UGCAGCU-----CCG- -5'
24925 5' -55.5 NC_005284.1 + 18488 0.67 0.628165
Target:  5'- -gCGCCGAgaaCGCGcUCGgcgugACGUCGAuuccGGCg -3'
miRNA:   3'- uaGCGGCU---GCGCuAGU-----UGCAGCU----CCG- -5'
24925 5' -55.5 NC_005284.1 + 49030 0.67 0.628165
Target:  5'- uUCGUCGAUGCaGUC--CGcCGGGGCa -3'
miRNA:   3'- uAGCGGCUGCGcUAGuuGCaGCUCCG- -5'
24925 5' -55.5 NC_005284.1 + 3067 0.68 0.617242
Target:  5'- aGUUGCUggaGACGCGGgcauUCAACaUCGAGGa -3'
miRNA:   3'- -UAGCGG---CUGCGCU----AGUUGcAGCUCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.