miRNA display CGI


Results 1 - 20 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24926 5' -58.4 NC_005284.1 + 44632 0.66 0.603402
Target:  5'- uCGACACaagCACGUUCGCUgaacaGAGCaGCg -3'
miRNA:   3'- cGCUGUGccaGUGCGAGCGG-----CUCG-CG- -5'
24926 5' -58.4 NC_005284.1 + 45430 0.66 0.602341
Target:  5'- gGCGACgauauucGCGGcgUCGCGaUUGUCGGGCGa -3'
miRNA:   3'- -CGCUG-------UGCC--AGUGCgAGCGGCUCGCg -5'
24926 5' -58.4 NC_005284.1 + 11258 0.66 0.5981
Target:  5'- cGCGGCAgCGGcUCGCGCggcgaaggggggcggUGUucauucgcuggaaagCGAGCGCa -3'
miRNA:   3'- -CGCUGU-GCC-AGUGCGa--------------GCG---------------GCUCGCG- -5'
24926 5' -58.4 NC_005284.1 + 11330 0.66 0.592805
Target:  5'- cCGGCAgCGGaUCGCGCaacugcgCGUCGAG-GCg -3'
miRNA:   3'- cGCUGU-GCC-AGUGCGa------GCGGCUCgCG- -5'
24926 5' -58.4 NC_005284.1 + 37382 0.66 0.592805
Target:  5'- aCGcCGCGGUCG---UCGCCGuAGCGUu -3'
miRNA:   3'- cGCuGUGCCAGUgcgAGCGGC-UCGCG- -5'
24926 5' -58.4 NC_005284.1 + 6963 0.66 0.591747
Target:  5'- aGCGuCACGGauuacgaUCACGCUCaCCGc-CGCc -3'
miRNA:   3'- -CGCuGUGCC-------AGUGCGAGcGGCucGCG- -5'
24926 5' -58.4 NC_005284.1 + 8351 0.66 0.586461
Target:  5'- aCGACAucugcucgcacagcuCGGcCaACGuCUUGCCGAGcCGCa -3'
miRNA:   3'- cGCUGU---------------GCCaG-UGC-GAGCGGCUC-GCG- -5'
24926 5' -58.4 NC_005284.1 + 48436 0.66 0.582239
Target:  5'- uGCGA-AUGGUC-CGCaagUGCC-AGCGCg -3'
miRNA:   3'- -CGCUgUGCCAGuGCGa--GCGGcUCGCG- -5'
24926 5' -58.4 NC_005284.1 + 21408 0.66 0.582239
Target:  5'- cGCGACACGcgccccgccaGUCGCccgcauugaaccGcCUCGCCGuuGUGCu -3'
miRNA:   3'- -CGCUGUGC----------CAGUG------------C-GAGCGGCu-CGCG- -5'
24926 5' -58.4 NC_005284.1 + 15243 0.66 0.582239
Target:  5'- uCGGCACGGcCGCaaGgUUGCgGcAGCGCa -3'
miRNA:   3'- cGCUGUGCCaGUG--CgAGCGgC-UCGCG- -5'
24926 5' -58.4 NC_005284.1 + 7055 0.66 0.571712
Target:  5'- cGCGccauguACGCGcGUCACGaCgaaauacggCGCCG-GCGCc -3'
miRNA:   3'- -CGC------UGUGC-CAGUGC-Ga--------GCGGCuCGCG- -5'
24926 5' -58.4 NC_005284.1 + 11015 0.66 0.571712
Target:  5'- gGCGACGaggcCGGcCAUGCggGCCu-GCGCa -3'
miRNA:   3'- -CGCUGU----GCCaGUGCGagCGGcuCGCG- -5'
24926 5' -58.4 NC_005284.1 + 14678 0.66 0.570662
Target:  5'- uCGGCGcCGGaacacuuUCGCGCcgacgagaUCGCCaAGCGCa -3'
miRNA:   3'- cGCUGU-GCC-------AGUGCG--------AGCGGcUCGCG- -5'
24926 5' -58.4 NC_005284.1 + 47781 0.66 0.561231
Target:  5'- uCGAgGCGG---CGCUCGCggaggcgacgggCGAGCGCu -3'
miRNA:   3'- cGCUgUGCCaguGCGAGCG------------GCUCGCG- -5'
24926 5' -58.4 NC_005284.1 + 9634 0.66 0.561231
Target:  5'- aGCGGCGgaGGcuUCAgCGCagGCCGAGCucGCg -3'
miRNA:   3'- -CGCUGUg-CC--AGU-GCGagCGGCUCG--CG- -5'
24926 5' -58.4 NC_005284.1 + 8898 0.66 0.561231
Target:  5'- cGCGACacACGG-CAacCGCUCgacgcgacaGCCGAGCuGUa -3'
miRNA:   3'- -CGCUG--UGCCaGU--GCGAG---------CGGCUCG-CG- -5'
24926 5' -58.4 NC_005284.1 + 22025 0.66 0.561231
Target:  5'- gGCGACcggcgugcguGCGGgaaCACGCaUGCCGGuCGCc -3'
miRNA:   3'- -CGCUG----------UGCCa--GUGCGaGCGGCUcGCG- -5'
24926 5' -58.4 NC_005284.1 + 16131 0.66 0.550803
Target:  5'- gGCGACGuuCGGUUuCGCgcaGCCGuGGgGCa -3'
miRNA:   3'- -CGCUGU--GCCAGuGCGag-CGGC-UCgCG- -5'
24926 5' -58.4 NC_005284.1 + 12342 0.66 0.550803
Target:  5'- gGCGAUcCGGcuUCGCGCgauUCGCCGcGgGUg -3'
miRNA:   3'- -CGCUGuGCC--AGUGCG---AGCGGCuCgCG- -5'
24926 5' -58.4 NC_005284.1 + 46445 0.66 0.550803
Target:  5'- cCGAuCGCcGUCGCcgaauGC-CGCCGAGCGUc -3'
miRNA:   3'- cGCU-GUGcCAGUG-----CGaGCGGCUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.