miRNA display CGI


Results 21 - 40 of 117 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24926 5' -58.4 NC_005284.1 + 29801 0.66 0.550803
Target:  5'- uUGAgACGaUCAaGCUgugCGCCGAGUGCa -3'
miRNA:   3'- cGCUgUGCcAGUgCGA---GCGGCUCGCG- -5'
24926 5' -58.4 NC_005284.1 + 10452 0.66 0.548724
Target:  5'- gGCGACGCGGgcgGCGCaaagugucauggUGCCGAcguuuggcgauGCGCc -3'
miRNA:   3'- -CGCUGUGCCag-UGCGa-----------GCGGCU-----------CGCG- -5'
24926 5' -58.4 NC_005284.1 + 17008 0.67 0.540435
Target:  5'- uGCG-CGCGG-CA-GCUCGauccgaugCGAGCGCu -3'
miRNA:   3'- -CGCuGUGCCaGUgCGAGCg-------GCUCGCG- -5'
24926 5' -58.4 NC_005284.1 + 47880 0.67 0.540435
Target:  5'- cGCGcCGCcaa-GCGCUCGCCcgucgccuccgcGAGCGCc -3'
miRNA:   3'- -CGCuGUGccagUGCGAGCGG------------CUCGCG- -5'
24926 5' -58.4 NC_005284.1 + 9257 0.67 0.540435
Target:  5'- gGCGGCACGGaUACGCUguUCGAGaaaauGCa -3'
miRNA:   3'- -CGCUGUGCCaGUGCGAgcGGCUCg----CG- -5'
24926 5' -58.4 NC_005284.1 + 39496 0.67 0.537337
Target:  5'- aGCgGGCGCGGUUGgucagugcauguggUGCUCGCCGcggccgauGUGCu -3'
miRNA:   3'- -CG-CUGUGCCAGU--------------GCGAGCGGCu-------CGCG- -5'
24926 5' -58.4 NC_005284.1 + 10660 0.67 0.530134
Target:  5'- cGCGAgGaacUGGUgCGCGC-CG-CGGGCGCg -3'
miRNA:   3'- -CGCUgU---GCCA-GUGCGaGCgGCUCGCG- -5'
24926 5' -58.4 NC_005284.1 + 48382 0.67 0.530134
Target:  5'- aCGACgACGG-CACGCacaUCuauCCGAGCGUc -3'
miRNA:   3'- cGCUG-UGCCaGUGCG---AGc--GGCUCGCG- -5'
24926 5' -58.4 NC_005284.1 + 10236 0.67 0.530134
Target:  5'- -gGGCACGGUgGCGCUUgggGCUGc-CGCg -3'
miRNA:   3'- cgCUGUGCCAgUGCGAG---CGGCucGCG- -5'
24926 5' -58.4 NC_005284.1 + 12225 0.67 0.530134
Target:  5'- cCGACA--GcCGCGCUUGCCGcaccaccgAGCGCg -3'
miRNA:   3'- cGCUGUgcCaGUGCGAGCGGC--------UCGCG- -5'
24926 5' -58.4 NC_005284.1 + 49517 0.67 0.519905
Target:  5'- aGUGGC-CGGUCGaGgUCGCCGGaUGCg -3'
miRNA:   3'- -CGCUGuGCCAGUgCgAGCGGCUcGCG- -5'
24926 5' -58.4 NC_005284.1 + 39073 0.67 0.519905
Target:  5'- cGCG-CAUGcGUUGCG-UCGCC-AGCGCg -3'
miRNA:   3'- -CGCuGUGC-CAGUGCgAGCGGcUCGCG- -5'
24926 5' -58.4 NC_005284.1 + 8253 0.67 0.519905
Target:  5'- uGCGGCuCGGcaagACGUUgGCCGAGCuguGCg -3'
miRNA:   3'- -CGCUGuGCCag--UGCGAgCGGCUCG---CG- -5'
24926 5' -58.4 NC_005284.1 + 21607 0.67 0.515836
Target:  5'- aGCGuugggcaagaucuCGCGcGcCGCGCUcgaCGCCGAGCaGCg -3'
miRNA:   3'- -CGCu------------GUGC-CaGUGCGA---GCGGCUCG-CG- -5'
24926 5' -58.4 NC_005284.1 + 30513 0.67 0.509755
Target:  5'- gGCGACucGCGaaacagCAC-CUCGCCGucGCGCa -3'
miRNA:   3'- -CGCUG--UGCca----GUGcGAGCGGCu-CGCG- -5'
24926 5' -58.4 NC_005284.1 + 17911 0.67 0.509755
Target:  5'- aGCGGCugGcGaaaggaUCACGCUCGaCaaGGCGCc -3'
miRNA:   3'- -CGCUGugC-C------AGUGCGAGC-GgcUCGCG- -5'
24926 5' -58.4 NC_005284.1 + 13993 0.67 0.509755
Target:  5'- aUGGCGCGGcUGCGCgguaaGCgGGGCGUg -3'
miRNA:   3'- cGCUGUGCCaGUGCGag---CGgCUCGCG- -5'
24926 5' -58.4 NC_005284.1 + 35538 0.67 0.509755
Target:  5'- cGUGuCGCGGUCGCGag-GUCGAGC-Cg -3'
miRNA:   3'- -CGCuGUGCCAGUGCgagCGGCUCGcG- -5'
24926 5' -58.4 NC_005284.1 + 54664 0.67 0.509755
Target:  5'- cCGugACuGUCACGCggcgaagacggCGCgCGAGCGg -3'
miRNA:   3'- cGCugUGcCAGUGCGa----------GCG-GCUCGCg -5'
24926 5' -58.4 NC_005284.1 + 12281 0.67 0.509755
Target:  5'- cGCGccGCAgUGGUguCGCa-GCCGGGCGUg -3'
miRNA:   3'- -CGC--UGU-GCCAguGCGagCGGCUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.