miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24927 3' -55.8 NC_005284.1 + 21338 0.66 0.702706
Target:  5'- gCGGgGCGCGugucgcgcgaucaacGAgUCGGaCAACGGUCGGc -3'
miRNA:   3'- -GCCgCGUGU---------------CUaAGUC-GUUGCCGGCU- -5'
24927 3' -55.8 NC_005284.1 + 21495 0.66 0.698389
Target:  5'- uGGcCGCGCugc-UUGGCAugGCGGCCGGc -3'
miRNA:   3'- gCC-GCGUGucuaAGUCGU--UGCCGGCU- -5'
24927 3' -55.8 NC_005284.1 + 41109 0.66 0.698389
Target:  5'- uCGGCGCGCAGuAUgcgugaacguccUCcGCGACGaucGCCGu -3'
miRNA:   3'- -GCCGCGUGUC-UA------------AGuCGUUGC---CGGCu -5'
24927 3' -55.8 NC_005284.1 + 13728 0.66 0.687552
Target:  5'- aGGCGCA-GGAaaUC-GCAACGGCCc- -3'
miRNA:   3'- gCCGCGUgUCUa-AGuCGUUGCCGGcu -5'
24927 3' -55.8 NC_005284.1 + 53845 0.66 0.687552
Target:  5'- aCGGggugaucgccCGC-CAG-UUCAGCAucgagcacaGCGGCCGGg -3'
miRNA:   3'- -GCC----------GCGuGUCuAAGUCGU---------UGCCGGCU- -5'
24927 3' -55.8 NC_005284.1 + 29879 0.66 0.687552
Target:  5'- uCGGCGCACAGcuugaucgUCucaAGUuccACGGCCa- -3'
miRNA:   3'- -GCCGCGUGUCua------AG---UCGu--UGCCGGcu -5'
24927 3' -55.8 NC_005284.1 + 9342 0.66 0.676661
Target:  5'- uCGGCGaguCGGAUcaAGCGACgGGCgCGAg -3'
miRNA:   3'- -GCCGCgu-GUCUAagUCGUUG-CCG-GCU- -5'
24927 3' -55.8 NC_005284.1 + 5456 0.66 0.676661
Target:  5'- cCGGUGCAUuag-UCgAGCAagccgGCGGCUGAu -3'
miRNA:   3'- -GCCGCGUGucuaAG-UCGU-----UGCCGGCU- -5'
24927 3' -55.8 NC_005284.1 + 9965 0.66 0.676661
Target:  5'- uCGGCGCGCuGAgcucCuGCuguGCGGCUGc -3'
miRNA:   3'- -GCCGCGUGuCUaa--GuCGu--UGCCGGCu -5'
24927 3' -55.8 NC_005284.1 + 27712 0.66 0.670106
Target:  5'- cCGGCGCgAUGGAUUUA-CGAaccaugcuacgagacCGGCCGAa -3'
miRNA:   3'- -GCCGCG-UGUCUAAGUcGUU---------------GCCGGCU- -5'
24927 3' -55.8 NC_005284.1 + 53386 0.66 0.654766
Target:  5'- -uGUGCGCGGAUgcCAGCGAC-GUCGAa -3'
miRNA:   3'- gcCGCGUGUCUAa-GUCGUUGcCGGCU- -5'
24927 3' -55.8 NC_005284.1 + 28810 0.67 0.643781
Target:  5'- aCGaaGUcuuguuGCGGAUUCAGCAAauugauggcCGGCCGAc -3'
miRNA:   3'- -GCcgCG------UGUCUAAGUCGUU---------GCCGGCU- -5'
24927 3' -55.8 NC_005284.1 + 31362 0.67 0.643781
Target:  5'- uGGCGCGCGGAccugUUCcGCcuGAUcGCCGAc -3'
miRNA:   3'- gCCGCGUGUCU----AAGuCG--UUGcCGGCU- -5'
24927 3' -55.8 NC_005284.1 + 9628 0.67 0.643781
Target:  5'- -cGCGCaagcgGCGGAggcUUCAGCGcaGGCCGAg -3'
miRNA:   3'- gcCGCG-----UGUCU---AAGUCGUugCCGGCU- -5'
24927 3' -55.8 NC_005284.1 + 1992 0.67 0.643781
Target:  5'- uGGUGCgACAGGUUCGuuGCGcguGCgGGUCGAg -3'
miRNA:   3'- gCCGCG-UGUCUAAGU--CGU---UG-CCGGCU- -5'
24927 3' -55.8 NC_005284.1 + 15200 0.67 0.643781
Target:  5'- -cGCGCucgcguCGGAggacuacGCAGCGGCCGAa -3'
miRNA:   3'- gcCGCGu-----GUCUaagu---CGUUGCCGGCU- -5'
24927 3' -55.8 NC_005284.1 + 21165 0.67 0.643781
Target:  5'- -cGCGCGCGGc-UCgAGCAACGGCUc- -3'
miRNA:   3'- gcCGCGUGUCuaAG-UCGUUGCCGGcu -5'
24927 3' -55.8 NC_005284.1 + 17607 0.67 0.639384
Target:  5'- gCGGCcguGUACAGGUagaccggaucggaCGGCAuauCGGCCGAc -3'
miRNA:   3'- -GCCG---CGUGUCUAa------------GUCGUu--GCCGGCU- -5'
24927 3' -55.8 NC_005284.1 + 21570 0.67 0.632786
Target:  5'- aGGcCGCGCGGGcgUUCGacgcGCAGCGgcauGCCGAa -3'
miRNA:   3'- gCC-GCGUGUCU--AAGU----CGUUGC----CGGCU- -5'
24927 3' -55.8 NC_005284.1 + 10386 0.67 0.631686
Target:  5'- gCGGCuGCGCAcGA---AGCAagaggcgucgcggGCGGCCGAu -3'
miRNA:   3'- -GCCG-CGUGU-CUaagUCGU-------------UGCCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.