miRNA display CGI


Results 1 - 20 of 56 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24927 5' -60.7 NC_005284.1 + 12278 0.66 0.450787
Target:  5'- -gUCCGCgCcgCaGUGguGUCGCaGCCg -3'
miRNA:   3'- caAGGCG-GuaGcCACguCGGCGgCGG- -5'
24927 5' -60.7 NC_005284.1 + 14263 0.66 0.450787
Target:  5'- --gCCGCCccuUUGG-GgGGCCGCucuCGCCg -3'
miRNA:   3'- caaGGCGGu--AGCCaCgUCGGCG---GCGG- -5'
24927 5' -60.7 NC_005284.1 + 11930 0.66 0.450787
Target:  5'- ---gCGCCAgUCGGccUGCaacgcgAGCCGCUGCUc -3'
miRNA:   3'- caagGCGGU-AGCC--ACG------UCGGCGGCGG- -5'
24927 5' -60.7 NC_005284.1 + 4570 0.66 0.450787
Target:  5'- cGUUUCGaguUCGGcGCuaccGCCGCCGCg -3'
miRNA:   3'- -CAAGGCgguAGCCaCGu---CGGCGGCGg -5'
24927 5' -60.7 NC_005284.1 + 759 0.66 0.450787
Target:  5'- -cUCCGgaucgaacuuCCAUCGGaaauccuucuUGCGGCuCGCUGCa -3'
miRNA:   3'- caAGGC----------GGUAGCC----------ACGUCG-GCGGCGg -5'
24927 5' -60.7 NC_005284.1 + 11168 0.66 0.450787
Target:  5'- ----aGCUcgCGccGCGGCCGCCGCg -3'
miRNA:   3'- caaggCGGuaGCcaCGUCGGCGGCGg -5'
24927 5' -60.7 NC_005284.1 + 4680 0.66 0.449835
Target:  5'- --aCCGUCAagCGGggaucauUGC-GCCGCCGCa -3'
miRNA:   3'- caaGGCGGUa-GCC-------ACGuCGGCGGCGg -5'
24927 5' -60.7 NC_005284.1 + 44936 0.66 0.441322
Target:  5'- --aCCGCgCcUCGGUGUA-UCGCcCGCCg -3'
miRNA:   3'- caaGGCG-GuAGCCACGUcGGCG-GCGG- -5'
24927 5' -60.7 NC_005284.1 + 18299 0.66 0.441322
Target:  5'- -aUCgGCCGUUGcugaaucuGUGC-GCCGUCGUCg -3'
miRNA:   3'- caAGgCGGUAGC--------CACGuCGGCGGCGG- -5'
24927 5' -60.7 NC_005284.1 + 30454 0.66 0.431971
Target:  5'- --gUCGCCGauUCGuGUGCuGCCgGCCGgCg -3'
miRNA:   3'- caaGGCGGU--AGC-CACGuCGG-CGGCgG- -5'
24927 5' -60.7 NC_005284.1 + 14193 0.66 0.431971
Target:  5'- --cCCcCCAaaGGgGCGGCCGUCGCUg -3'
miRNA:   3'- caaGGcGGUagCCaCGUCGGCGGCGG- -5'
24927 5' -60.7 NC_005284.1 + 33564 0.66 0.422736
Target:  5'- --cCCGCUauGUCGGcaGCAGC-GCCgGCCg -3'
miRNA:   3'- caaGGCGG--UAGCCa-CGUCGgCGG-CGG- -5'
24927 5' -60.7 NC_005284.1 + 46679 0.66 0.422736
Target:  5'- --cCCGCCGcUCGGgacguucgGCGuuGCCcacugcGCCGCCa -3'
miRNA:   3'- caaGGCGGU-AGCCa-------CGU--CGG------CGGCGG- -5'
24927 5' -60.7 NC_005284.1 + 20729 0.66 0.422736
Target:  5'- cGUUgCGaCAUUGGgaUGuCGGCCGCCGUUg -3'
miRNA:   3'- -CAAgGCgGUAGCC--AC-GUCGGCGGCGG- -5'
24927 5' -60.7 NC_005284.1 + 14234 0.66 0.413622
Target:  5'- ---aUGCCGUCGGUGU-GCUGuuGgCCg -3'
miRNA:   3'- caagGCGGUAGCCACGuCGGCggC-GG- -5'
24927 5' -60.7 NC_005284.1 + 31009 0.66 0.413622
Target:  5'- --gCCGCCGUgcGUGCGGaaGuuGCCg -3'
miRNA:   3'- caaGGCGGUAgcCACGUCggCggCGG- -5'
24927 5' -60.7 NC_005284.1 + 33959 0.66 0.404629
Target:  5'- --cCCGCuCGUCGGccgGC-GCUGCUGCg -3'
miRNA:   3'- caaGGCG-GUAGCCa--CGuCGGCGGCGg -5'
24927 5' -60.7 NC_005284.1 + 30662 0.67 0.39576
Target:  5'- cGUgCgGCCGUCGa-GCAGCCgGCCGgCg -3'
miRNA:   3'- -CAaGgCGGUAGCcaCGUCGG-CGGCgG- -5'
24927 5' -60.7 NC_005284.1 + 49035 0.67 0.39576
Target:  5'- --aCCGCUucGUCGaUGCAGuCCGCCGg- -3'
miRNA:   3'- caaGGCGG--UAGCcACGUC-GGCGGCgg -5'
24927 5' -60.7 NC_005284.1 + 21605 0.67 0.393124
Target:  5'- -gUgCGCCgAUCaGGUGCucgacgcaagcgccGGCCGCCauGCCa -3'
miRNA:   3'- caAgGCGG-UAG-CCACG--------------UCGGCGG--CGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.