Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24928 | 3' | -54.3 | NC_005284.1 | + | 18658 | 1.13 | 0.000712 |
Target: 5'- cAGCGAACGGAGAUCUGGUACAGCCGCa -3' miRNA: 3'- -UCGCUUGCCUCUAGACCAUGUCGGCG- -5' |
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24928 | 3' | -54.3 | NC_005284.1 | + | 19909 | 0.75 | 0.29663 |
Target: 5'- uGCGggUGGGGugcgaUGGUGguuCAGCCGCg -3' miRNA: 3'- uCGCuuGCCUCuag--ACCAU---GUCGGCG- -5' |
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24928 | 3' | -54.3 | NC_005284.1 | + | 10647 | 0.74 | 0.31964 |
Target: 5'- cGGCGAagcgcuGCGcGAGGaaCUGGUGCGcGCCGCg -3' miRNA: 3'- -UCGCU------UGC-CUCUa-GACCAUGU-CGGCG- -5' |
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24928 | 3' | -54.3 | NC_005284.1 | + | 15263 | 0.73 | 0.387386 |
Target: 5'- cGCGAGCGcGAacuGGUCggucGGcACGGCCGCa -3' miRNA: 3'- uCGCUUGC-CU---CUAGa---CCaUGUCGGCG- -5' |
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24928 | 3' | -54.3 | NC_005284.1 | + | 23887 | 0.72 | 0.444028 |
Target: 5'- gAGCGAGCGGGGcagugCUGGgggAUcgAGCCGg -3' miRNA: 3'- -UCGCUUGCCUCua---GACCa--UG--UCGGCg -5' |
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24928 | 3' | -54.3 | NC_005284.1 | + | 2371 | 0.7 | 0.505033 |
Target: 5'- -uCGAGCGGAGAgacGGUgACGGCCGa -3' miRNA: 3'- ucGCUUGCCUCUagaCCA-UGUCGGCg -5' |
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24928 | 3' | -54.3 | NC_005284.1 | + | 39495 | 0.7 | 0.536867 |
Target: 5'- uAGCGGgcGCGGuuGGUCagugcaugUGGUGCucGCCGCg -3' miRNA: 3'- -UCGCU--UGCCu-CUAG--------ACCAUGu-CGGCG- -5' |
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24928 | 3' | -54.3 | NC_005284.1 | + | 12414 | 0.7 | 0.547636 |
Target: 5'- cGCGcAACGGcgGGAUCUcGGU-CAGCgCGCc -3' miRNA: 3'- uCGC-UUGCC--UCUAGA-CCAuGUCG-GCG- -5' |
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24928 | 3' | -54.3 | NC_005284.1 | + | 19669 | 0.69 | 0.558472 |
Target: 5'- uGCGAAUGGGGAUgUGGUG-AGCauggaUGCg -3' miRNA: 3'- uCGCUUGCCUCUAgACCAUgUCG-----GCG- -5' |
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24928 | 3' | -54.3 | NC_005284.1 | + | 13374 | 0.69 | 0.569368 |
Target: 5'- cGGUGGGCGGcGAUCUGucUGCGGCgGUu -3' miRNA: 3'- -UCGCUUGCCuCUAGACc-AUGUCGgCG- -5' |
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24928 | 3' | -54.3 | NC_005284.1 | + | 17698 | 0.68 | 0.623346 |
Target: 5'- uGGCGucaucaaGACGGAGGUCacgGcGUuCGGCUGCa -3' miRNA: 3'- -UCGC-------UUGCCUCUAGa--C-CAuGUCGGCG- -5' |
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24928 | 3' | -54.3 | NC_005284.1 | + | 198 | 0.67 | 0.73378 |
Target: 5'- cGGCGAggcGCGGGGcAUgUGGgagcGCGuuguGCCGCu -3' miRNA: 3'- -UCGCU---UGCCUC-UAgACCa---UGU----CGGCG- -5' |
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24928 | 3' | -54.3 | NC_005284.1 | + | 33132 | 0.67 | 0.73378 |
Target: 5'- cGUGAACGGGu-UgaGGgGCGGCUGCa -3' miRNA: 3'- uCGCUUGCCUcuAgaCCaUGUCGGCG- -5' |
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24928 | 3' | -54.3 | NC_005284.1 | + | 8460 | 0.66 | 0.754773 |
Target: 5'- cGGCGGAgGGAGAggaaggCggcGGUGauccguuucaAGCCGCc -3' miRNA: 3'- -UCGCUUgCCUCUa-----Ga--CCAUg---------UCGGCG- -5' |
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24928 | 3' | -54.3 | NC_005284.1 | + | 15740 | 0.66 | 0.754773 |
Target: 5'- cGCGGugugggGCGGA-AUgUGGgccgACAGCUGCa -3' miRNA: 3'- uCGCU------UGCCUcUAgACCa---UGUCGGCG- -5' |
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24928 | 3' | -54.3 | NC_005284.1 | + | 18232 | 0.66 | 0.754773 |
Target: 5'- cAGC-AACGGccgaucacGAUCguuccgccaucGGUGCAGCCGCc -3' miRNA: 3'- -UCGcUUGCCu-------CUAGa----------CCAUGUCGGCG- -5' |
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24928 | 3' | -54.3 | NC_005284.1 | + | 13115 | 0.66 | 0.785283 |
Target: 5'- aAGCGGuuCGG-GAUUUGG-AUGGCCGa -3' miRNA: 3'- -UCGCUu-GCCuCUAGACCaUGUCGGCg -5' |
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24928 | 3' | -54.3 | NC_005284.1 | + | 31540 | 0.66 | 0.775259 |
Target: 5'- cGGCGGcACGGcGGUCaauUGGgggcccgGCGcGCCGCa -3' miRNA: 3'- -UCGCU-UGCCuCUAG---ACCa------UGU-CGGCG- -5' |
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24928 | 3' | -54.3 | NC_005284.1 | + | 31764 | 0.66 | 0.744334 |
Target: 5'- cGCGcuugaacuACGuGAGcgCUGGcGCAGCgGCa -3' miRNA: 3'- uCGCu-------UGC-CUCuaGACCaUGUCGgCG- -5' |
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24928 | 3' | -54.3 | NC_005284.1 | + | 36954 | 0.66 | 0.744334 |
Target: 5'- cAGCaGAA-GGAGAacgaaCUGcGUGCAGCCGa -3' miRNA: 3'- -UCG-CUUgCCUCUa----GAC-CAUGUCGGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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