miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24928 5' -54.7 NC_005284.1 + 27000 0.66 0.793019
Target:  5'- cUCGUccGAaaagGGCGCGACCG-GUUCUCg- -3'
miRNA:   3'- -AGCG--CUg---CUGCGCUGGUuCAAGAGgc -5'
24928 5' -54.7 NC_005284.1 + 31456 0.66 0.783282
Target:  5'- cCGCGACGGCGCGuuCUAugcaaUCCa -3'
miRNA:   3'- aGCGCUGCUGCGCu-GGUucaagAGGc -5'
24928 5' -54.7 NC_005284.1 + 34479 0.66 0.783282
Target:  5'- -aGCaGCGACGCGGaCAAGUaggagaccuUCUCUGa -3'
miRNA:   3'- agCGcUGCUGCGCUgGUUCA---------AGAGGC- -5'
24928 5' -54.7 NC_005284.1 + 11890 0.66 0.783282
Target:  5'- cCGCGcucGCG-CGCGACCug---CUCCGc -3'
miRNA:   3'- aGCGC---UGCuGCGCUGGuucaaGAGGC- -5'
24928 5' -54.7 NC_005284.1 + 24580 0.66 0.773391
Target:  5'- -aGgGAUGGuuCGCGAUCG-GUUCUCCa -3'
miRNA:   3'- agCgCUGCU--GCGCUGGUuCAAGAGGc -5'
24928 5' -54.7 NC_005284.1 + 8901 0.66 0.773391
Target:  5'- gCGUGACGAUccgaagGCGAuugcUCAGGUUCgUCCa -3'
miRNA:   3'- aGCGCUGCUG------CGCU----GGUUCAAG-AGGc -5'
24928 5' -54.7 NC_005284.1 + 22411 0.66 0.773391
Target:  5'- gUGCuGaACGACGCGAUaCAGGUUCaCCa -3'
miRNA:   3'- aGCG-C-UGCUGCGCUG-GUUCAAGaGGc -5'
24928 5' -54.7 NC_005284.1 + 33541 0.66 0.763357
Target:  5'- -gGcCGACGGCGCGugUAAGcaCUgCGg -3'
miRNA:   3'- agC-GCUGCUGCGCugGUUCaaGAgGC- -5'
24928 5' -54.7 NC_005284.1 + 18753 0.66 0.762346
Target:  5'- gUCGCGAuuCGGCGUGcggcuguACC-AGaUCUCCGu -3'
miRNA:   3'- -AGCGCU--GCUGCGC-------UGGuUCaAGAGGC- -5'
24928 5' -54.7 NC_005284.1 + 15417 0.66 0.753192
Target:  5'- gUCGCG-CGACuaguCGGCCGccAGUUCgUCCa -3'
miRNA:   3'- -AGCGCuGCUGc---GCUGGU--UCAAG-AGGc -5'
24928 5' -54.7 NC_005284.1 + 32412 0.66 0.750117
Target:  5'- -gGCGugGACGCuucGGCCGacugccaaucggccGGaUUCUCCa -3'
miRNA:   3'- agCGCugCUGCG---CUGGU--------------UC-AAGAGGc -5'
24928 5' -54.7 NC_005284.1 + 54077 0.67 0.742904
Target:  5'- aCGaucACGACGCGGCCA---UCUUCGa -3'
miRNA:   3'- aGCgc-UGCUGCGCUGGUucaAGAGGC- -5'
24928 5' -54.7 NC_005284.1 + 45440 0.67 0.742904
Target:  5'- uUCGCGGCGucgcgauugucGgGCGACC-AGUUgCUCgCGg -3'
miRNA:   3'- -AGCGCUGC-----------UgCGCUGGuUCAA-GAG-GC- -5'
24928 5' -54.7 NC_005284.1 + 39403 0.67 0.732508
Target:  5'- -gGcCGAUGugGCGACCG---UUUCCGa -3'
miRNA:   3'- agC-GCUGCugCGCUGGUucaAGAGGC- -5'
24928 5' -54.7 NC_005284.1 + 7451 0.67 0.722013
Target:  5'- aCGCGACGACguucgcgaGCGACgaaAAGgaaUCCGa -3'
miRNA:   3'- aGCGCUGCUG--------CGCUGg--UUCaagAGGC- -5'
24928 5' -54.7 NC_005284.1 + 39823 0.67 0.71143
Target:  5'- cCGCGuGCcgcauugcaugGGCGCGGCCGAuGUUCUCg- -3'
miRNA:   3'- aGCGC-UG-----------CUGCGCUGGUU-CAAGAGgc -5'
24928 5' -54.7 NC_005284.1 + 15953 0.67 0.700771
Target:  5'- gCGCG-CGACGcCGGCCcacGUUCgCCGu -3'
miRNA:   3'- aGCGCuGCUGC-GCUGGuu-CAAGaGGC- -5'
24928 5' -54.7 NC_005284.1 + 41723 0.67 0.700771
Target:  5'- cCGaCGAUGACgGCGAUUAcAGcUCUCCGa -3'
miRNA:   3'- aGC-GCUGCUG-CGCUGGU-UCaAGAGGC- -5'
24928 5' -54.7 NC_005284.1 + 2651 0.68 0.694343
Target:  5'- cUCGCGACGAUcacuucccagaacuCGGCCGcaguGUUCUCUGc -3'
miRNA:   3'- -AGCGCUGCUGc-------------GCUGGUu---CAAGAGGC- -5'
24928 5' -54.7 NC_005284.1 + 36427 0.68 0.679267
Target:  5'- gUCGCGGcCGGCGCGAUCGAGa------ -3'
miRNA:   3'- -AGCGCU-GCUGCGCUGGUUCaagaggc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.