Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24928 | 5' | -54.7 | NC_005284.1 | + | 36427 | 0.68 | 0.679267 |
Target: 5'- gUCGCGGcCGGCGCGAUCGAGa------ -3' miRNA: 3'- -AGCGCU-GCUGCGCUGGUUCaagaggc -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 13389 | 0.68 | 0.657588 |
Target: 5'- cCGCGcucgGCGACGUG-CCA-GUUCUUCa -3' miRNA: 3'- aGCGC----UGCUGCGCuGGUuCAAGAGGc -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 10745 | 0.69 | 0.603156 |
Target: 5'- aUCGCGcccGCGGCGCGcACCA-GUUCcUCGc -3' miRNA: 3'- -AGCGC---UGCUGCGC-UGGUuCAAGaGGC- -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 40251 | 0.69 | 0.603156 |
Target: 5'- gUCGCGACGcACGUGGC--GGUUCgcgagauagCCGg -3' miRNA: 3'- -AGCGCUGC-UGCGCUGguUCAAGa--------GGC- -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 11598 | 0.69 | 0.581489 |
Target: 5'- -gGCGACuACGCGGCCGAGcgUCagCGu -3' miRNA: 3'- agCGCUGcUGCGCUGGUUCa-AGagGC- -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 18142 | 0.69 | 0.603156 |
Target: 5'- -aGCGACGACGaCGGCCAGaucgUCUacaCGa -3' miRNA: 3'- agCGCUGCUGC-GCUGGUUca--AGAg--GC- -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 25602 | 0.69 | 0.581489 |
Target: 5'- gCGCGcACGACGaCGGCCg----CUCCGa -3' miRNA: 3'- aGCGC-UGCUGC-GCUGGuucaaGAGGC- -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 3264 | 0.69 | 0.62492 |
Target: 5'- cCGgGAgaGCGCGAUCAguuuuaugcggAGUUCUCCGu -3' miRNA: 3'- aGCgCUgcUGCGCUGGU-----------UCAAGAGGC- -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 10082 | 0.69 | 0.61403 |
Target: 5'- gCGCGGCGAcCGCGACCGcggcGGgUCUgaagacggcgaCCGa -3' miRNA: 3'- aGCGCUGCU-GCGCUGGU----UCaAGA-----------GGC- -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 8716 | 0.7 | 0.528176 |
Target: 5'- gCGCGcuCGACGCGGCgCGcAGUUCgaUCCGc -3' miRNA: 3'- aGCGCu-GCUGCGCUG-GU-UCAAG--AGGC- -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 5983 | 0.7 | 0.538711 |
Target: 5'- gUCGCGACGAUGCGAuUCGGGcggcaaUCCu -3' miRNA: 3'- -AGCGCUGCUGCGCU-GGUUCaag---AGGc -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 40171 | 0.7 | 0.570713 |
Target: 5'- cUCGCGaaccgccacguGCGuCGCGACCAA---CUCCGg -3' miRNA: 3'- -AGCGC-----------UGCuGCGCUGGUUcaaGAGGC- -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 48831 | 0.71 | 0.466793 |
Target: 5'- cUCGCGGCGcacgccGCGCGGgUugauGGUUCUCUGa -3' miRNA: 3'- -AGCGCUGC------UGCGCUgGu---UCAAGAGGC- -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 47355 | 0.72 | 0.437508 |
Target: 5'- aCGCGGCGACGgccguCGAUCAcgaGGUUCUCg- -3' miRNA: 3'- aGCGCUGCUGC-----GCUGGU---UCAAGAGgc -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 1134 | 0.74 | 0.348108 |
Target: 5'- -gGCGACGGCGCGucGCCAucGUgCUCCa -3' miRNA: 3'- agCGCUGCUGCGC--UGGUu-CAaGAGGc -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 41604 | 0.74 | 0.348108 |
Target: 5'- gCGCGAgGcCGCG-CCGAGUgcgagCUCCGa -3' miRNA: 3'- aGCGCUgCuGCGCuGGUUCAa----GAGGC- -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 20893 | 0.75 | 0.308559 |
Target: 5'- -aGCGACGACGCGACCGAcgcuaugcUUC-CCGc -3' miRNA: 3'- agCGCUGCUGCGCUGGUUc-------AAGaGGC- -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 18692 | 1.1 | 0.001178 |
Target: 5'- aUCGCGACGACGCGACCAAGUUCUCCGa -3' miRNA: 3'- -AGCGCUGCUGCGCUGGUUCAAGAGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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