Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24928 | 5' | -54.7 | NC_005284.1 | + | 15953 | 0.67 | 0.700771 |
Target: 5'- gCGCG-CGACGcCGGCCcacGUUCgCCGu -3' miRNA: 3'- aGCGCuGCUGC-GCUGGuu-CAAGaGGC- -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 41723 | 0.67 | 0.700771 |
Target: 5'- cCGaCGAUGACgGCGAUUAcAGcUCUCCGa -3' miRNA: 3'- aGC-GCUGCUG-CGCUGGU-UCaAGAGGC- -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 39823 | 0.67 | 0.71143 |
Target: 5'- cCGCGuGCcgcauugcaugGGCGCGGCCGAuGUUCUCg- -3' miRNA: 3'- aGCGC-UG-----------CUGCGCUGGUU-CAAGAGgc -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 7451 | 0.67 | 0.722013 |
Target: 5'- aCGCGACGACguucgcgaGCGACgaaAAGgaaUCCGa -3' miRNA: 3'- aGCGCUGCUG--------CGCUGg--UUCaagAGGC- -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 39403 | 0.67 | 0.732508 |
Target: 5'- -gGcCGAUGugGCGACCG---UUUCCGa -3' miRNA: 3'- agC-GCUGCugCGCUGGUucaAGAGGC- -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 54077 | 0.67 | 0.742904 |
Target: 5'- aCGaucACGACGCGGCCA---UCUUCGa -3' miRNA: 3'- aGCgc-UGCUGCGCUGGUucaAGAGGC- -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 45440 | 0.67 | 0.742904 |
Target: 5'- uUCGCGGCGucgcgauugucGgGCGACC-AGUUgCUCgCGg -3' miRNA: 3'- -AGCGCUGC-----------UgCGCUGGuUCAA-GAG-GC- -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 32412 | 0.66 | 0.750117 |
Target: 5'- -gGCGugGACGCuucGGCCGacugccaaucggccGGaUUCUCCa -3' miRNA: 3'- agCGCugCUGCG---CUGGU--------------UC-AAGAGGc -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 15417 | 0.66 | 0.753192 |
Target: 5'- gUCGCG-CGACuaguCGGCCGccAGUUCgUCCa -3' miRNA: 3'- -AGCGCuGCUGc---GCUGGU--UCAAG-AGGc -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 18753 | 0.66 | 0.762346 |
Target: 5'- gUCGCGAuuCGGCGUGcggcuguACC-AGaUCUCCGu -3' miRNA: 3'- -AGCGCU--GCUGCGC-------UGGuUCaAGAGGC- -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 33541 | 0.66 | 0.763357 |
Target: 5'- -gGcCGACGGCGCGugUAAGcaCUgCGg -3' miRNA: 3'- agC-GCUGCUGCGCugGUUCaaGAgGC- -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 22411 | 0.66 | 0.773391 |
Target: 5'- gUGCuGaACGACGCGAUaCAGGUUCaCCa -3' miRNA: 3'- aGCG-C-UGCUGCGCUG-GUUCAAGaGGc -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 8901 | 0.66 | 0.773391 |
Target: 5'- gCGUGACGAUccgaagGCGAuugcUCAGGUUCgUCCa -3' miRNA: 3'- aGCGCUGCUG------CGCU----GGUUCAAG-AGGc -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 24580 | 0.66 | 0.773391 |
Target: 5'- -aGgGAUGGuuCGCGAUCG-GUUCUCCa -3' miRNA: 3'- agCgCUGCU--GCGCUGGUuCAAGAGGc -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 31456 | 0.66 | 0.783282 |
Target: 5'- cCGCGACGGCGCGuuCUAugcaaUCCa -3' miRNA: 3'- aGCGCUGCUGCGCu-GGUucaagAGGc -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 11890 | 0.66 | 0.783282 |
Target: 5'- cCGCGcucGCG-CGCGACCug---CUCCGc -3' miRNA: 3'- aGCGC---UGCuGCGCUGGuucaaGAGGC- -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 34479 | 0.66 | 0.783282 |
Target: 5'- -aGCaGCGACGCGGaCAAGUaggagaccuUCUCUGa -3' miRNA: 3'- agCGcUGCUGCGCUgGUUCA---------AGAGGC- -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 27000 | 0.66 | 0.793019 |
Target: 5'- cUCGUccGAaaagGGCGCGACCG-GUUCUCg- -3' miRNA: 3'- -AGCG--CUg---CUGCGCUGGUuCAAGAGgc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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