miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24928 5' -54.7 NC_005284.1 + 1134 0.74 0.348108
Target:  5'- -gGCGACGGCGCGucGCCAucGUgCUCCa -3'
miRNA:   3'- agCGCUGCUGCGC--UGGUu-CAaGAGGc -5'
24928 5' -54.7 NC_005284.1 + 2651 0.68 0.694343
Target:  5'- cUCGCGACGAUcacuucccagaacuCGGCCGcaguGUUCUCUGc -3'
miRNA:   3'- -AGCGCUGCUGc-------------GCUGGUu---CAAGAGGC- -5'
24928 5' -54.7 NC_005284.1 + 3264 0.69 0.62492
Target:  5'- cCGgGAgaGCGCGAUCAguuuuaugcggAGUUCUCCGu -3'
miRNA:   3'- aGCgCUgcUGCGCUGGU-----------UCAAGAGGC- -5'
24928 5' -54.7 NC_005284.1 + 5983 0.7 0.538711
Target:  5'- gUCGCGACGAUGCGAuUCGGGcggcaaUCCu -3'
miRNA:   3'- -AGCGCUGCUGCGCU-GGUUCaag---AGGc -5'
24928 5' -54.7 NC_005284.1 + 7451 0.67 0.722013
Target:  5'- aCGCGACGACguucgcgaGCGACgaaAAGgaaUCCGa -3'
miRNA:   3'- aGCGCUGCUG--------CGCUGg--UUCaagAGGC- -5'
24928 5' -54.7 NC_005284.1 + 8716 0.7 0.528176
Target:  5'- gCGCGcuCGACGCGGCgCGcAGUUCgaUCCGc -3'
miRNA:   3'- aGCGCu-GCUGCGCUG-GU-UCAAG--AGGC- -5'
24928 5' -54.7 NC_005284.1 + 8901 0.66 0.773391
Target:  5'- gCGUGACGAUccgaagGCGAuugcUCAGGUUCgUCCa -3'
miRNA:   3'- aGCGCUGCUG------CGCU----GGUUCAAG-AGGc -5'
24928 5' -54.7 NC_005284.1 + 9788 0.68 0.646708
Target:  5'- gUCGCaACGGCGCGcGCCAAcgUCgCCGg -3'
miRNA:   3'- -AGCGcUGCUGCGC-UGGUUcaAGaGGC- -5'
24928 5' -54.7 NC_005284.1 + 10082 0.69 0.61403
Target:  5'- gCGCGGCGAcCGCGACCGcggcGGgUCUgaagacggcgaCCGa -3'
miRNA:   3'- aGCGCUGCU-GCGCUGGU----UCaAGA-----------GGC- -5'
24928 5' -54.7 NC_005284.1 + 10745 0.69 0.603156
Target:  5'- aUCGCGcccGCGGCGCGcACCA-GUUCcUCGc -3'
miRNA:   3'- -AGCGC---UGCUGCGC-UGGUuCAAGaGGC- -5'
24928 5' -54.7 NC_005284.1 + 11598 0.69 0.581489
Target:  5'- -gGCGACuACGCGGCCGAGcgUCagCGu -3'
miRNA:   3'- agCGCUGcUGCGCUGGUUCa-AGagGC- -5'
24928 5' -54.7 NC_005284.1 + 11890 0.66 0.783282
Target:  5'- cCGCGcucGCG-CGCGACCug---CUCCGc -3'
miRNA:   3'- aGCGC---UGCuGCGCUGGuucaaGAGGC- -5'
24928 5' -54.7 NC_005284.1 + 13389 0.68 0.657588
Target:  5'- cCGCGcucgGCGACGUG-CCA-GUUCUUCa -3'
miRNA:   3'- aGCGC----UGCUGCGCuGGUuCAAGAGGc -5'
24928 5' -54.7 NC_005284.1 + 15417 0.66 0.753192
Target:  5'- gUCGCG-CGACuaguCGGCCGccAGUUCgUCCa -3'
miRNA:   3'- -AGCGCuGCUGc---GCUGGU--UCAAG-AGGc -5'
24928 5' -54.7 NC_005284.1 + 15953 0.67 0.700771
Target:  5'- gCGCG-CGACGcCGGCCcacGUUCgCCGu -3'
miRNA:   3'- aGCGCuGCUGC-GCUGGuu-CAAGaGGC- -5'
24928 5' -54.7 NC_005284.1 + 18142 0.69 0.603156
Target:  5'- -aGCGACGACGaCGGCCAGaucgUCUacaCGa -3'
miRNA:   3'- agCGCUGCUGC-GCUGGUUca--AGAg--GC- -5'
24928 5' -54.7 NC_005284.1 + 18692 1.1 0.001178
Target:  5'- aUCGCGACGACGCGACCAAGUUCUCCGa -3'
miRNA:   3'- -AGCGCUGCUGCGCUGGUUCAAGAGGC- -5'
24928 5' -54.7 NC_005284.1 + 18753 0.66 0.762346
Target:  5'- gUCGCGAuuCGGCGUGcggcuguACC-AGaUCUCCGu -3'
miRNA:   3'- -AGCGCU--GCUGCGC-------UGGuUCaAGAGGC- -5'
24928 5' -54.7 NC_005284.1 + 20893 0.75 0.308559
Target:  5'- -aGCGACGACGCGACCGAcgcuaugcUUC-CCGc -3'
miRNA:   3'- agCGCUGCUGCGCUGGUUc-------AAGaGGC- -5'
24928 5' -54.7 NC_005284.1 + 22411 0.66 0.773391
Target:  5'- gUGCuGaACGACGCGAUaCAGGUUCaCCa -3'
miRNA:   3'- aGCG-C-UGCUGCGCUG-GUUCAAGaGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.