Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24928 | 5' | -54.7 | NC_005284.1 | + | 54077 | 0.67 | 0.742904 |
Target: 5'- aCGaucACGACGCGGCCA---UCUUCGa -3' miRNA: 3'- aGCgc-UGCUGCGCUGGUucaAGAGGC- -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 48831 | 0.71 | 0.466793 |
Target: 5'- cUCGCGGCGcacgccGCGCGGgUugauGGUUCUCUGa -3' miRNA: 3'- -AGCGCUGC------UGCGCUgGu---UCAAGAGGC- -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 47355 | 0.72 | 0.437508 |
Target: 5'- aCGCGGCGACGgccguCGAUCAcgaGGUUCUCg- -3' miRNA: 3'- aGCGCUGCUGC-----GCUGGU---UCAAGAGgc -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 45440 | 0.67 | 0.742904 |
Target: 5'- uUCGCGGCGucgcgauugucGgGCGACC-AGUUgCUCgCGg -3' miRNA: 3'- -AGCGCUGC-----------UgCGCUGGuUCAA-GAG-GC- -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 41723 | 0.67 | 0.700771 |
Target: 5'- cCGaCGAUGACgGCGAUUAcAGcUCUCCGa -3' miRNA: 3'- aGC-GCUGCUG-CGCUGGU-UCaAGAGGC- -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 41604 | 0.74 | 0.348108 |
Target: 5'- gCGCGAgGcCGCG-CCGAGUgcgagCUCCGa -3' miRNA: 3'- aGCGCUgCuGCGCuGGUUCAa----GAGGC- -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 40251 | 0.69 | 0.603156 |
Target: 5'- gUCGCGACGcACGUGGC--GGUUCgcgagauagCCGg -3' miRNA: 3'- -AGCGCUGC-UGCGCUGguUCAAGa--------GGC- -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 40171 | 0.7 | 0.570713 |
Target: 5'- cUCGCGaaccgccacguGCGuCGCGACCAA---CUCCGg -3' miRNA: 3'- -AGCGC-----------UGCuGCGCUGGUUcaaGAGGC- -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 39823 | 0.67 | 0.71143 |
Target: 5'- cCGCGuGCcgcauugcaugGGCGCGGCCGAuGUUCUCg- -3' miRNA: 3'- aGCGC-UG-----------CUGCGCUGGUU-CAAGAGgc -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 39403 | 0.67 | 0.732508 |
Target: 5'- -gGcCGAUGugGCGACCG---UUUCCGa -3' miRNA: 3'- agC-GCUGCugCGCUGGUucaAGAGGC- -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 36427 | 0.68 | 0.679267 |
Target: 5'- gUCGCGGcCGGCGCGAUCGAGa------ -3' miRNA: 3'- -AGCGCU-GCUGCGCUGGUUCaagaggc -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 34479 | 0.66 | 0.783282 |
Target: 5'- -aGCaGCGACGCGGaCAAGUaggagaccuUCUCUGa -3' miRNA: 3'- agCGcUGCUGCGCUgGUUCA---------AGAGGC- -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 33541 | 0.66 | 0.763357 |
Target: 5'- -gGcCGACGGCGCGugUAAGcaCUgCGg -3' miRNA: 3'- agC-GCUGCUGCGCugGUUCaaGAgGC- -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 32412 | 0.66 | 0.750117 |
Target: 5'- -gGCGugGACGCuucGGCCGacugccaaucggccGGaUUCUCCa -3' miRNA: 3'- agCGCugCUGCG---CUGGU--------------UC-AAGAGGc -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 31456 | 0.66 | 0.783282 |
Target: 5'- cCGCGACGGCGCGuuCUAugcaaUCCa -3' miRNA: 3'- aGCGCUGCUGCGCu-GGUucaagAGGc -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 27000 | 0.66 | 0.793019 |
Target: 5'- cUCGUccGAaaagGGCGCGACCG-GUUCUCg- -3' miRNA: 3'- -AGCG--CUg---CUGCGCUGGUuCAAGAGgc -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 25602 | 0.69 | 0.581489 |
Target: 5'- gCGCGcACGACGaCGGCCg----CUCCGa -3' miRNA: 3'- aGCGC-UGCUGC-GCUGGuucaaGAGGC- -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 24580 | 0.66 | 0.773391 |
Target: 5'- -aGgGAUGGuuCGCGAUCG-GUUCUCCa -3' miRNA: 3'- agCgCUGCU--GCGCUGGUuCAAGAGGc -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 22411 | 0.66 | 0.773391 |
Target: 5'- gUGCuGaACGACGCGAUaCAGGUUCaCCa -3' miRNA: 3'- aGCG-C-UGCUGCGCUG-GUUCAAGaGGc -5' |
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24928 | 5' | -54.7 | NC_005284.1 | + | 20893 | 0.75 | 0.308559 |
Target: 5'- -aGCGACGACGCGACCGAcgcuaugcUUC-CCGc -3' miRNA: 3'- agCGCUGCUGCGCUGGUUc-------AAGaGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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