miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24928 5' -54.7 NC_005284.1 + 36427 0.68 0.679267
Target:  5'- gUCGCGGcCGGCGCGAUCGAGa------ -3'
miRNA:   3'- -AGCGCU-GCUGCGCUGGUUCaagaggc -5'
24928 5' -54.7 NC_005284.1 + 13389 0.68 0.657588
Target:  5'- cCGCGcucgGCGACGUG-CCA-GUUCUUCa -3'
miRNA:   3'- aGCGC----UGCUGCGCuGGUuCAAGAGGc -5'
24928 5' -54.7 NC_005284.1 + 10745 0.69 0.603156
Target:  5'- aUCGCGcccGCGGCGCGcACCA-GUUCcUCGc -3'
miRNA:   3'- -AGCGC---UGCUGCGC-UGGUuCAAGaGGC- -5'
24928 5' -54.7 NC_005284.1 + 40251 0.69 0.603156
Target:  5'- gUCGCGACGcACGUGGC--GGUUCgcgagauagCCGg -3'
miRNA:   3'- -AGCGCUGC-UGCGCUGguUCAAGa--------GGC- -5'
24928 5' -54.7 NC_005284.1 + 25602 0.69 0.581489
Target:  5'- gCGCGcACGACGaCGGCCg----CUCCGa -3'
miRNA:   3'- aGCGC-UGCUGC-GCUGGuucaaGAGGC- -5'
24928 5' -54.7 NC_005284.1 + 48831 0.71 0.466793
Target:  5'- cUCGCGGCGcacgccGCGCGGgUugauGGUUCUCUGa -3'
miRNA:   3'- -AGCGCUGC------UGCGCUgGu---UCAAGAGGC- -5'
24928 5' -54.7 NC_005284.1 + 47355 0.72 0.437508
Target:  5'- aCGCGGCGACGgccguCGAUCAcgaGGUUCUCg- -3'
miRNA:   3'- aGCGCUGCUGC-----GCUGGU---UCAAGAGgc -5'
24928 5' -54.7 NC_005284.1 + 2651 0.68 0.694343
Target:  5'- cUCGCGACGAUcacuucccagaacuCGGCCGcaguGUUCUCUGc -3'
miRNA:   3'- -AGCGCUGCUGc-------------GCUGGUu---CAAGAGGC- -5'
24928 5' -54.7 NC_005284.1 + 41723 0.67 0.700771
Target:  5'- cCGaCGAUGACgGCGAUUAcAGcUCUCCGa -3'
miRNA:   3'- aGC-GCUGCUG-CGCUGGU-UCaAGAGGC- -5'
24928 5' -54.7 NC_005284.1 + 32412 0.66 0.750117
Target:  5'- -gGCGugGACGCuucGGCCGacugccaaucggccGGaUUCUCCa -3'
miRNA:   3'- agCGCugCUGCG---CUGGU--------------UC-AAGAGGc -5'
24928 5' -54.7 NC_005284.1 + 18753 0.66 0.762346
Target:  5'- gUCGCGAuuCGGCGUGcggcuguACC-AGaUCUCCGu -3'
miRNA:   3'- -AGCGCU--GCUGCGC-------UGGuUCaAGAGGC- -5'
24928 5' -54.7 NC_005284.1 + 33541 0.66 0.763357
Target:  5'- -gGcCGACGGCGCGugUAAGcaCUgCGg -3'
miRNA:   3'- agC-GCUGCUGCGCugGUUCaaGAgGC- -5'
24928 5' -54.7 NC_005284.1 + 24580 0.66 0.773391
Target:  5'- -aGgGAUGGuuCGCGAUCG-GUUCUCCa -3'
miRNA:   3'- agCgCUGCU--GCGCUGGUuCAAGAGGc -5'
24928 5' -54.7 NC_005284.1 + 22411 0.66 0.773391
Target:  5'- gUGCuGaACGACGCGAUaCAGGUUCaCCa -3'
miRNA:   3'- aGCG-C-UGCUGCGCUG-GUUCAAGaGGc -5'
24928 5' -54.7 NC_005284.1 + 8901 0.66 0.773391
Target:  5'- gCGUGACGAUccgaagGCGAuugcUCAGGUUCgUCCa -3'
miRNA:   3'- aGCGCUGCUG------CGCU----GGUUCAAG-AGGc -5'
24928 5' -54.7 NC_005284.1 + 31456 0.66 0.783282
Target:  5'- cCGCGACGGCGCGuuCUAugcaaUCCa -3'
miRNA:   3'- aGCGCUGCUGCGCu-GGUucaagAGGc -5'
24928 5' -54.7 NC_005284.1 + 11890 0.66 0.783282
Target:  5'- cCGCGcucGCG-CGCGACCug---CUCCGc -3'
miRNA:   3'- aGCGC---UGCuGCGCUGGuucaaGAGGC- -5'
24928 5' -54.7 NC_005284.1 + 20893 0.75 0.308559
Target:  5'- -aGCGACGACGCGACCGAcgcuaugcUUC-CCGc -3'
miRNA:   3'- agCGCUGCUGCGCUGGUUc-------AAGaGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.