Results 1 - 10 of 10 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 24929 | 3' | -58.1 | NC_005284.1 | + | 24430 | 0.66 | 0.531039 |
|
Target: 5'- cAACCGUGGCGaAGcCUUGCGaCgCGAUa -3' miRNA: 3'- -UUGGCACCGCgUCaGGAUGC-G-GCUAg -5' |
|||||||
| 24929 | 3' | -58.1 | NC_005284.1 | + | 22167 | 0.67 | 0.479376 |
|
Target: 5'- --aCGUaGGCaaGCAGggCCUugGCCGAUUc -3' miRNA: 3'- uugGCA-CCG--CGUCa-GGAugCGGCUAG- -5' |
|||||||
| 24929 | 3' | -58.1 | NC_005284.1 | + | 15381 | 0.67 | 0.479376 |
|
Target: 5'- uGCCGcUGcgcccgcacaucGUGCGGUCCU-CGUCGGUCg -3' miRNA: 3'- uUGGC-AC------------CGCGUCAGGAuGCGGCUAG- -5' |
|||||||
| 24929 | 3' | -58.1 | NC_005284.1 | + | 51434 | 0.68 | 0.411507 |
|
Target: 5'- uGCCGUGGUgaguGCGGUCCgcacgaaGCUGAUg -3' miRNA: 3'- uUGGCACCG----CGUCAGGaug----CGGCUAg -5' |
|||||||
| 24929 | 3' | -58.1 | NC_005284.1 | + | 26133 | 0.69 | 0.384296 |
|
Target: 5'- cACCGUcGGCGguGUUCgcGCGCUGAcgUCg -3' miRNA: 3'- uUGGCA-CCGCguCAGGa-UGCGGCU--AG- -5' |
|||||||
| 24929 | 3' | -58.1 | NC_005284.1 | + | 4475 | 0.69 | 0.375494 |
|
Target: 5'- cGACCGUGGCuuuCGuUUCUACGCCcaGAUCg -3' miRNA: 3'- -UUGGCACCGc--GUcAGGAUGCGG--CUAG- -5' |
|||||||
| 24929 | 3' | -58.1 | NC_005284.1 | + | 48958 | 0.69 | 0.349919 |
|
Target: 5'- cGCCG-GGCGU-GUCCacgGCGCCGAc- -3' miRNA: 3'- uUGGCaCCGCGuCAGGa--UGCGGCUag -5' |
|||||||
| 24929 | 3' | -58.1 | NC_005284.1 | + | 30931 | 0.71 | 0.287925 |
|
Target: 5'- cGCCGUGGCGCuuucgCCgcCGgCGAUCa -3' miRNA: 3'- uUGGCACCGCGuca--GGauGCgGCUAG- -5' |
|||||||
| 24929 | 3' | -58.1 | NC_005284.1 | + | 3741 | 0.71 | 0.273842 |
|
Target: 5'- -uCUGUGGCaGCAcgacUCCUauACGCCGAUCg -3' miRNA: 3'- uuGGCACCG-CGUc---AGGA--UGCGGCUAG- -5' |
|||||||
| 24929 | 3' | -58.1 | NC_005284.1 | + | 19222 | 1.07 | 0.000683 |
|
Target: 5'- aAACCGUGGCGCAGUCCUACGCCGAUCu -3' miRNA: 3'- -UUGGCACCGCGUCAGGAUGCGGCUAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home