miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24929 5' -51.7 NC_005284.1 + 32815 0.66 0.911747
Target:  5'- uGCGggGCGGCGUCG-GUUAcGG-CAAGg -3'
miRNA:   3'- -CGCagCGCCGCAGCaUAGU-CUaGUUC- -5'
24929 5' -51.7 NC_005284.1 + 9079 0.66 0.9051
Target:  5'- aGCGuUCGCGGCGgggcaGUugCGcGGUCAGGa -3'
miRNA:   3'- -CGC-AGCGCCGCag---CAuaGU-CUAGUUC- -5'
24929 5' -51.7 NC_005284.1 + 11987 0.66 0.9051
Target:  5'- uCGuUCGCGGCGUCGggcaAGcUCAAu -3'
miRNA:   3'- cGC-AGCGCCGCAGCauagUCuAGUUc -5'
24929 5' -51.7 NC_005284.1 + 19031 0.67 0.875763
Target:  5'- uGCGUCGCcggccaucGGCGggGUgAUUAGGUCGAu -3'
miRNA:   3'- -CGCAGCG--------CCGCagCA-UAGUCUAGUUc -5'
24929 5' -51.7 NC_005284.1 + 4646 0.67 0.875763
Target:  5'- gGCGUgaGCGGCagcaacucgcugGUCGUcgCGGAccgUCAAGc -3'
miRNA:   3'- -CGCAg-CGCCG------------CAGCAuaGUCU---AGUUC- -5'
24929 5' -51.7 NC_005284.1 + 44524 0.67 0.867766
Target:  5'- uGCGaaGCGGCGUCG----AGAUCAc- -3'
miRNA:   3'- -CGCagCGCCGCAGCauagUCUAGUuc -5'
24929 5' -51.7 NC_005284.1 + 31286 0.67 0.867766
Target:  5'- aCGUCGCGGCGaugcuacgCGagAUCGGaAUCGAc -3'
miRNA:   3'- cGCAGCGCCGCa-------GCa-UAGUC-UAGUUc -5'
24929 5' -51.7 NC_005284.1 + 47744 0.67 0.866136
Target:  5'- gGCGguacgGCGGCGcgCGUAcguccgcguaagCAGAUCGAGg -3'
miRNA:   3'- -CGCag---CGCCGCa-GCAUa-----------GUCUAGUUC- -5'
24929 5' -51.7 NC_005284.1 + 8664 0.67 0.859516
Target:  5'- cGCGcaUGCGGCgGUCGUAUUcGGUCGu- -3'
miRNA:   3'- -CGCa-GCGCCG-CAGCAUAGuCUAGUuc -5'
24929 5' -51.7 NC_005284.1 + 34285 0.67 0.851022
Target:  5'- aGCGUCGCGauGUGcUCGUccGUCAGcgCAu- -3'
miRNA:   3'- -CGCAGCGC--CGC-AGCA--UAGUCuaGUuc -5'
24929 5' -51.7 NC_005284.1 + 35884 0.68 0.833334
Target:  5'- cCGUCGUGGaCGUCG-AUCuGAUaCGGGc -3'
miRNA:   3'- cGCAGCGCC-GCAGCaUAGuCUA-GUUC- -5'
24929 5' -51.7 NC_005284.1 + 16911 0.68 0.795423
Target:  5'- aCGUCGCucuaugaGCGcUCGcAUCGGAUCGAGc -3'
miRNA:   3'- cGCAGCGc------CGC-AGCaUAGUCUAGUUC- -5'
24929 5' -51.7 NC_005284.1 + 18723 0.69 0.77537
Target:  5'- cGCGUaucCGCaGGCGUCGacGUCGuAUCAGGg -3'
miRNA:   3'- -CGCA---GCG-CCGCAGCa-UAGUcUAGUUC- -5'
24929 5' -51.7 NC_005284.1 + 17784 0.69 0.77537
Target:  5'- cGCGguaCGagaccgggaCGGUGUCGUuUCAGGUCGGGc -3'
miRNA:   3'- -CGCa--GC---------GCCGCAGCAuAGUCUAGUUC- -5'
24929 5' -51.7 NC_005284.1 + 35672 0.69 0.744177
Target:  5'- cGCG-CGCGGUGUCGUcUCAuucGUCAu- -3'
miRNA:   3'- -CGCaGCGCCGCAGCAuAGUc--UAGUuc -5'
24929 5' -51.7 NC_005284.1 + 45430 0.69 0.743118
Target:  5'- gGCGacgauauUCGCGGCGUCGcgauUGUCGGG-CGAc -3'
miRNA:   3'- -CGC-------AGCGCCGCAGC----AUAGUCUaGUUc -5'
24929 5' -51.7 NC_005284.1 + 8371 0.7 0.690012
Target:  5'- gGCGaugaUCGCGGCGgcggCGUuUCAGucgCAGGg -3'
miRNA:   3'- -CGC----AGCGCCGCa---GCAuAGUCua-GUUC- -5'
24929 5' -51.7 NC_005284.1 + 49637 0.71 0.667861
Target:  5'- cGCGUCaGCGGCGUucCGacgGUUcGAUCGAGc -3'
miRNA:   3'- -CGCAG-CGCCGCA--GCa--UAGuCUAGUUC- -5'
24929 5' -51.7 NC_005284.1 + 50267 0.72 0.578726
Target:  5'- aGCGUCagaaGGCGaUCGUGaagCGGAUCAAGc -3'
miRNA:   3'- -CGCAGcg--CCGC-AGCAUa--GUCUAGUUC- -5'
24929 5' -51.7 NC_005284.1 + 5942 0.75 0.449445
Target:  5'- uGCGUUGCGGCGcCGauguagaucuugAUCAGAUCGu- -3'
miRNA:   3'- -CGCAGCGCCGCaGCa-----------UAGUCUAGUuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.