miRNA display CGI


Results 21 - 30 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24930 3' -55.1 NC_005284.1 + 43221 0.69 0.547636
Target:  5'- ----aUCGCCgcgaaagGCGGCuAUCaGGGCCGCg -3'
miRNA:   3'- cucgaAGCGGa------UGUUG-UAG-CCCGGCG- -5'
24930 3' -55.1 NC_005284.1 + 30426 0.69 0.505033
Target:  5'- -cGCUcgaUCGCCUcgaucuCAACGUCGuaGCCGCg -3'
miRNA:   3'- cuCGA---AGCGGAu-----GUUGUAGCc-CGGCG- -5'
24930 3' -55.1 NC_005284.1 + 12675 0.7 0.494601
Target:  5'- cGGCgaCGgCUACAccCAgCGGGCCGCg -3'
miRNA:   3'- cUCGaaGCgGAUGUu-GUaGCCCGGCG- -5'
24930 3' -55.1 NC_005284.1 + 30589 0.72 0.352361
Target:  5'- aGGCUggCGC--GCucCAUCGGGCCGCu -3'
miRNA:   3'- cUCGAa-GCGgaUGuuGUAGCCCGGCG- -5'
24930 3' -55.1 NC_005284.1 + 24360 0.73 0.327602
Target:  5'- aGGCUUCGCC-ACGguugccccuACAUCaGGGaCCGCu -3'
miRNA:   3'- cUCGAAGCGGaUGU---------UGUAG-CCC-GGCG- -5'
24930 3' -55.1 NC_005284.1 + 38630 0.74 0.281301
Target:  5'- cGGGCUuucgggaugauccUCGCCUACGGCAUCacuaucGGCUGUg -3'
miRNA:   3'- -CUCGA-------------AGCGGAUGUUGUAGc-----CCGGCG- -5'
24930 3' -55.1 NC_005284.1 + 10387 0.74 0.263881
Target:  5'- cGAGCggCGCCUGCAugucgaucagacucgACGUCGcGCUGCu -3'
miRNA:   3'- -CUCGaaGCGGAUGU---------------UGUAGCcCGGCG- -5'
24930 3' -55.1 NC_005284.1 + 48462 0.81 0.091913
Target:  5'- cAGCUUCGCCggaUGCAGCAgUCGGGCUGg -3'
miRNA:   3'- cUCGAAGCGG---AUGUUGU-AGCCCGGCg -5'
24930 3' -55.1 NC_005284.1 + 18784 0.82 0.083594
Target:  5'- uGGGCg-CGCCUggucgacacguccgGCAACGUCGGGCCGUg -3'
miRNA:   3'- -CUCGaaGCGGA--------------UGUUGUAGCCCGGCG- -5'
24930 3' -55.1 NC_005284.1 + 21262 1.12 0.000595
Target:  5'- uGAGCUUCGCCUACAACAUCGGGCCGCg -3'
miRNA:   3'- -CUCGAAGCGGAUGUUGUAGCCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.