miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24932 3' -57.8 NC_005284.1 + 22013 1.08 0.00076
Target:  5'- aACGAGAAACAGGGCGACCGGCGUGCGu -3'
miRNA:   3'- -UGCUCUUUGUCCCGCUGGCCGCACGC- -5'
24932 3' -57.8 NC_005284.1 + 16291 0.66 0.556808
Target:  5'- aGCGcuGcGCAGGGCGAgCCGGUGccGCu -3'
miRNA:   3'- -UGCucUuUGUCCCGCU-GGCCGCa-CGc -5'
24932 3' -57.8 NC_005284.1 + 47781 0.66 0.567407
Target:  5'- uCGAGGcggcgcucGCGGaGGCGACgGGCGaGCGc -3'
miRNA:   3'- uGCUCUu-------UGUC-CCGCUGgCCGCaCGC- -5'
24932 3' -57.8 NC_005284.1 + 10660 0.66 0.578055
Target:  5'- cGCGAGGAACuGGuGCGcGCCGcGgGcGCGa -3'
miRNA:   3'- -UGCUCUUUGuCC-CGC-UGGC-CgCaCGC- -5'
24932 3' -57.8 NC_005284.1 + 8744 0.66 0.593034
Target:  5'- cCGcGAAuacgcacaagccgccGCAGcGGCGuuCGGCGUGCa -3'
miRNA:   3'- uGCuCUU---------------UGUC-CCGCugGCCGCACGc -5'
24932 3' -57.8 NC_005284.1 + 2622 0.66 0.599473
Target:  5'- cGCGAGaAAGCuccGGuCGGCgGGUGUGCu -3'
miRNA:   3'- -UGCUC-UUUGuc-CC-GCUGgCCGCACGc -5'
24932 3' -57.8 NC_005284.1 + 10070 0.66 0.599473
Target:  5'- aGCGAGcgGAACGcGcGGCGACCGcgaccGCG-GCGg -3'
miRNA:   3'- -UGCUC--UUUGU-C-CCGCUGGC-----CGCaCGC- -5'
24932 3' -57.8 NC_005284.1 + 18977 0.66 0.606998
Target:  5'- aACGAucuACGcGGGCGacgaaaggcucaauGCUGGCGUGUGg -3'
miRNA:   3'- -UGCUcuuUGU-CCCGC--------------UGGCCGCACGC- -5'
24932 3' -57.8 NC_005284.1 + 26552 0.66 0.610227
Target:  5'- uUGGGcGGGCAGuaGGUGGCCGGCGagagugGCGu -3'
miRNA:   3'- uGCUC-UUUGUC--CCGCUGGCCGCa-----CGC- -5'
24932 3' -57.8 NC_005284.1 + 52736 0.67 0.504816
Target:  5'- ------uACGGGGUGGCCGGUGUGg- -3'
miRNA:   3'- ugcucuuUGUCCCGCUGGCCGCACgc -5'
24932 3' -57.8 NC_005284.1 + 12391 0.68 0.484599
Target:  5'- cGCGGGAGGaGGGGauucGCCGGCGcGCa -3'
miRNA:   3'- -UGCUCUUUgUCCCgc--UGGCCGCaCGc -5'
24932 3' -57.8 NC_005284.1 + 21499 0.68 0.474636
Target:  5'- cGCGcugcuuGGCAuGGCGGCCGGCGcuUGCGu -3'
miRNA:   3'- -UGCucu---UUGUcCCGCUGGCCGC--ACGC- -5'
24932 3' -57.8 NC_005284.1 + 21308 0.73 0.222722
Target:  5'- aACGGcGAGGCGguucaaugcGGGCGACUGGCGggGCGc -3'
miRNA:   3'- -UGCU-CUUUGU---------CCCGCUGGCCGCa-CGC- -5'
24932 3' -57.8 NC_005284.1 + 19401 0.73 0.253026
Target:  5'- gACGAGGGcgguGCAGGcGUGAUCGGCGcGCc -3'
miRNA:   3'- -UGCUCUU----UGUCC-CGCUGGCCGCaCGc -5'
24932 3' -57.8 NC_005284.1 + 45630 0.72 0.259479
Target:  5'- uGCGAGucuucGCGGGGCaGGCUGGCG-GCu -3'
miRNA:   3'- -UGCUCuu---UGUCCCG-CUGGCCGCaCGc -5'
24932 3' -57.8 NC_005284.1 + 14044 0.72 0.259479
Target:  5'- cCG-GAAGCGGGGCGgcagGCUGGCGUcaucGCGa -3'
miRNA:   3'- uGCuCUUUGUCCCGC----UGGCCGCA----CGC- -5'
24932 3' -57.8 NC_005284.1 + 33981 0.69 0.435863
Target:  5'- uGCGGGcugcucGACAGGGgGugCGGCGaggGCc -3'
miRNA:   3'- -UGCUCu-----UUGUCCCgCugGCCGCa--CGc -5'
24932 3' -57.8 NC_005284.1 + 32808 0.68 0.445387
Target:  5'- cGCGGGuuGCGGGGCGGCguCGGUuacgGCa -3'
miRNA:   3'- -UGCUCuuUGUCCCGCUG--GCCGca--CGc -5'
24932 3' -57.8 NC_005284.1 + 6815 0.68 0.445387
Target:  5'- gGCGAGGccGAgGGGGCGAUucgcaccgaguUGGCGcGCGc -3'
miRNA:   3'- -UGCUCU--UUgUCCCGCUG-----------GCCGCaCGC- -5'
24932 3' -57.8 NC_005284.1 + 16681 0.68 0.464777
Target:  5'- aGCGuGAGGCc-GGCG-UCGGCGUGCc -3'
miRNA:   3'- -UGCuCUUUGucCCGCuGGCCGCACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.