Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24932 | 3' | -57.8 | NC_005284.1 | + | 33981 | 0.69 | 0.435863 |
Target: 5'- uGCGGGcugcucGACAGGGgGugCGGCGaggGCc -3' miRNA: 3'- -UGCUCu-----UUGUCCCgCugGCCGCa--CGc -5' |
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24932 | 3' | -57.8 | NC_005284.1 | + | 14044 | 0.72 | 0.259479 |
Target: 5'- cCG-GAAGCGGGGCGgcagGCUGGCGUcaucGCGa -3' miRNA: 3'- uGCuCUUUGUCCCGC----UGGCCGCA----CGC- -5' |
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24932 | 3' | -57.8 | NC_005284.1 | + | 45630 | 0.72 | 0.259479 |
Target: 5'- uGCGAGucuucGCGGGGCaGGCUGGCG-GCu -3' miRNA: 3'- -UGCUCuu---UGUCCCG-CUGGCCGCaCGc -5' |
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24932 | 3' | -57.8 | NC_005284.1 | + | 19401 | 0.73 | 0.253026 |
Target: 5'- gACGAGGGcgguGCAGGcGUGAUCGGCGcGCc -3' miRNA: 3'- -UGCUCUU----UGUCC-CGCUGGCCGCaCGc -5' |
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24932 | 3' | -57.8 | NC_005284.1 | + | 21308 | 0.73 | 0.222722 |
Target: 5'- aACGGcGAGGCGguucaaugcGGGCGACUGGCGggGCGc -3' miRNA: 3'- -UGCU-CUUUGU---------CCCGCUGGCCGCa-CGC- -5' |
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24932 | 3' | -57.8 | NC_005284.1 | + | 22013 | 1.08 | 0.00076 |
Target: 5'- aACGAGAAACAGGGCGACCGGCGUGCGu -3' miRNA: 3'- -UGCUCUUUGUCCCGCUGGCCGCACGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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