miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24932 5' -56 NC_005284.1 + 50360 0.66 0.681937
Target:  5'- uGCGUGUGCCGGgugugUGCCgucuuaacCCGCUc -3'
miRNA:   3'- gUGCGUACGGCCa----GCGGaaa-----GGUGAc -5'
24932 5' -56 NC_005284.1 + 9588 0.66 0.681937
Target:  5'- aGCGCucGCCGGgCGCCgacCCACg- -3'
miRNA:   3'- gUGCGuaCGGCCaGCGGaaaGGUGac -5'
24932 5' -56 NC_005284.1 + 48021 0.66 0.671
Target:  5'- aCGCGCGUGaCCGuGUCGUCgacccUUCgCACg- -3'
miRNA:   3'- -GUGCGUAC-GGC-CAGCGGa----AAG-GUGac -5'
24932 5' -56 NC_005284.1 + 12415 0.66 0.649028
Target:  5'- uCGCGCGaaGCCGGaUCGCC--UCC-CUGc -3'
miRNA:   3'- -GUGCGUa-CGGCC-AGCGGaaAGGuGAC- -5'
24932 5' -56 NC_005284.1 + 11673 0.66 0.649028
Target:  5'- gACGCucgGCCGcguaGUCGCCgagcUCCGCg- -3'
miRNA:   3'- gUGCGua-CGGC----CAGCGGaa--AGGUGac -5'
24932 5' -56 NC_005284.1 + 30392 0.67 0.572147
Target:  5'- cCGCGUGUGCUGGUCGgCaugucgaucgUCCGCg- -3'
miRNA:   3'- -GUGCGUACGGCCAGCgGaa--------AGGUGac -5'
24932 5' -56 NC_005284.1 + 11187 0.69 0.501759
Target:  5'- gCGCGCGgaaaGCaagccuucgacgagaCGGUCGCCUcugCCGCUGc -3'
miRNA:   3'- -GUGCGUa---CG---------------GCCAGCGGAaa-GGUGAC- -5'
24932 5' -56 NC_005284.1 + 13062 0.69 0.497607
Target:  5'- aCGCGguUGuuG-UCGCCgccacUUCCGCUGg -3'
miRNA:   3'- -GUGCguACggCcAGCGGa----AAGGUGAC- -5'
24932 5' -56 NC_005284.1 + 39171 0.71 0.364005
Target:  5'- uGCGCAUGCCuucgagcaGGcCGCCguagUCCACg- -3'
miRNA:   3'- gUGCGUACGG--------CCaGCGGaa--AGGUGac -5'
24932 5' -56 NC_005284.1 + 22096 0.74 0.250803
Target:  5'- gCACGCAcGCCGGUCGCCcugUUUCUcguuACUu -3'
miRNA:   3'- -GUGCGUaCGGCCAGCGG---AAAGG----UGAc -5'
24932 5' -56 NC_005284.1 + 22047 1.08 0.000945
Target:  5'- aCACGCAUGCCGGUCGCCUUUCCACUGu -3'
miRNA:   3'- -GUGCGUACGGCCAGCGGAAAGGUGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.