miRNA display CGI


Results 1 - 20 of 28 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24933 3' -56.4 NC_005284.1 + 21869 0.66 0.662369
Target:  5'- ---cGGCUGCcguGCaGUGUCGgacaGCGACGc -3'
miRNA:   3'- acuaCCGACGu--CGaCGCAGC----UGCUGC- -5'
24933 3' -56.4 NC_005284.1 + 53578 0.66 0.65909
Target:  5'- cUGggGGCgUGCGGCUGUGgCGgucaucgaguucauGCGACu -3'
miRNA:   3'- -ACuaCCG-ACGUCGACGCaGC--------------UGCUGc -5'
24933 3' -56.4 NC_005284.1 + 26752 0.66 0.651429
Target:  5'- ----aGCUcgAGCUGCGUCGACGAg- -3'
miRNA:   3'- acuacCGAcgUCGACGCAGCUGCUgc -5'
24933 3' -56.4 NC_005284.1 + 29618 0.66 0.640472
Target:  5'- aUGAcGGCuccguuUGCGGCUGUGaCGACGuuGa -3'
miRNA:   3'- -ACUaCCG------ACGUCGACGCaGCUGCugC- -5'
24933 3' -56.4 NC_005284.1 + 31808 0.66 0.640472
Target:  5'- cGcUGGCUGCGGgaGCGagcaugguaugUCGAUG-CGg -3'
miRNA:   3'- aCuACCGACGUCgaCGC-----------AGCUGCuGC- -5'
24933 3' -56.4 NC_005284.1 + 33461 0.67 0.596662
Target:  5'- gUGAUGGCgagccGuCGGCaGCGcCGGcCGACGa -3'
miRNA:   3'- -ACUACCGa----C-GUCGaCGCaGCU-GCUGC- -5'
24933 3' -56.4 NC_005284.1 + 43138 0.67 0.595571
Target:  5'- aGAUGGaUUGCAGgggacguCUGCGgugacaUUGACGACGc -3'
miRNA:   3'- aCUACC-GACGUC-------GACGC------AGCUGCUGC- -5'
24933 3' -56.4 NC_005284.1 + 8069 0.67 0.585762
Target:  5'- gGAUGGUUgGCGGCgGCuauucUCGgACGACGa -3'
miRNA:   3'- aCUACCGA-CGUCGaCGc----AGC-UGCUGC- -5'
24933 3' -56.4 NC_005284.1 + 54684 0.67 0.585762
Target:  5'- aGAcGGCgcgcgaGCGGUUGCGgUGACGugGu -3'
miRNA:   3'- aCUaCCGa-----CGUCGACGCaGCUGCugC- -5'
24933 3' -56.4 NC_005284.1 + 47472 0.67 0.553325
Target:  5'- aGAUGGCUcGCAuGCUcGaCGUCGGCcACa -3'
miRNA:   3'- aCUACCGA-CGU-CGA-C-GCAGCUGcUGc -5'
24933 3' -56.4 NC_005284.1 + 49325 0.68 0.542627
Target:  5'- cGAUGGUUGgcaCGGCacgcgUGCG-CGACGACc -3'
miRNA:   3'- aCUACCGAC---GUCG-----ACGCaGCUGCUGc -5'
24933 3' -56.4 NC_005284.1 + 6770 0.68 0.531998
Target:  5'- aUGAaGGCucagccguucaUGCGGCcggcguuugaUGCGUCGAuCGGCGa -3'
miRNA:   3'- -ACUaCCG-----------ACGUCG----------ACGCAGCU-GCUGC- -5'
24933 3' -56.4 NC_005284.1 + 32808 0.68 0.500591
Target:  5'- cGcgGGUUGCggGGCgGCGUCGguuACGGCa -3'
miRNA:   3'- aCuaCCGACG--UCGaCGCAGC---UGCUGc -5'
24933 3' -56.4 NC_005284.1 + 23394 0.68 0.500591
Target:  5'- uUGAUGcaacGCAGUUcCGUCGACGACGc -3'
miRNA:   3'- -ACUACcga-CGUCGAcGCAGCUGCUGC- -5'
24933 3' -56.4 NC_005284.1 + 31617 0.68 0.490303
Target:  5'- --uUGGgUGCgGGCgGCGUCGAgGGCGc -3'
miRNA:   3'- acuACCgACG-UCGaCGCAGCUgCUGC- -5'
24933 3' -56.4 NC_005284.1 + 17765 0.69 0.47003
Target:  5'- cGcUGGCUGCuGCUGaCGUCG-CGguACGa -3'
miRNA:   3'- aCuACCGACGuCGAC-GCAGCuGC--UGC- -5'
24933 3' -56.4 NC_005284.1 + 26402 0.69 0.450193
Target:  5'- -cGUGGCUGCGccGCUucgagGUGggCGACGACGa -3'
miRNA:   3'- acUACCGACGU--CGA-----CGCa-GCUGCUGC- -5'
24933 3' -56.4 NC_005284.1 + 18065 0.7 0.430825
Target:  5'- cGGUGGCggGC-GCUGUGUgGAUGAuCGa -3'
miRNA:   3'- aCUACCGa-CGuCGACGCAgCUGCU-GC- -5'
24933 3' -56.4 NC_005284.1 + 37109 0.7 0.421327
Target:  5'- aGgcGGCacuacaGCAGC-GCGUCGAgGACGa -3'
miRNA:   3'- aCuaCCGa-----CGUCGaCGCAGCUgCUGC- -5'
24933 3' -56.4 NC_005284.1 + 14585 0.71 0.367093
Target:  5'- cGAUGGCUGCuGC-GCGUCgGAUGuCu -3'
miRNA:   3'- aCUACCGACGuCGaCGCAG-CUGCuGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.