Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24933 | 3' | -56.4 | NC_005284.1 | + | 16168 | 0.71 | 0.333701 |
Target: 5'- cUGAUggGGCU-CGGC-GCGUCGAUGGCGc -3' miRNA: 3'- -ACUA--CCGAcGUCGaCGCAGCUGCUGC- -5' |
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24933 | 3' | -56.4 | NC_005284.1 | + | 13990 | 0.72 | 0.302589 |
Target: 5'- gUGAUGGC-GCGGCUGCG-CGGuaagcggggcgUGACGu -3' miRNA: 3'- -ACUACCGaCGUCGACGCaGCU-----------GCUGC- -5' |
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24933 | 3' | -56.4 | NC_005284.1 | + | 18336 | 0.73 | 0.287891 |
Target: 5'- cGAcGGCgGCGGCUGCacCGAUGGCGg -3' miRNA: 3'- aCUaCCGaCGUCGACGcaGCUGCUGC- -5' |
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24933 | 3' | -56.4 | NC_005284.1 | + | 23344 | 0.73 | 0.266905 |
Target: 5'- gUGAUGGCggaaaGCGGCgGCGUUGgcccuacgcACGACGa -3' miRNA: 3'- -ACUACCGa----CGUCGaCGCAGC---------UGCUGC- -5' |
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24933 | 3' | -56.4 | NC_005284.1 | + | 3416 | 0.74 | 0.24087 |
Target: 5'- gGGUGGCaaUGCAGCgGUGUUGACGGu- -3' miRNA: 3'- aCUACCG--ACGUCGaCGCAGCUGCUgc -5' |
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24933 | 3' | -56.4 | NC_005284.1 | + | 22743 | 0.74 | 0.234701 |
Target: 5'- aGAUGGCcgaGCGGCUGCGgUCGAUcaaggGGCGc -3' miRNA: 3'- aCUACCGa--CGUCGACGC-AGCUG-----CUGC- -5' |
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24933 | 3' | -56.4 | NC_005284.1 | + | 45967 | 0.76 | 0.170598 |
Target: 5'- cGAUGGC-GCAGCgugGCGUgGACGAg- -3' miRNA: 3'- aCUACCGaCGUCGa--CGCAgCUGCUgc -5' |
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24933 | 3' | -56.4 | NC_005284.1 | + | 23194 | 1.1 | 0.000668 |
Target: 5'- gUGAUGGCUGCAGCUGCGUCGACGACGg -3' miRNA: 3'- -ACUACCGACGUCGACGCAGCUGCUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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