miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24933 3' -56.4 NC_005284.1 + 3416 0.74 0.24087
Target:  5'- gGGUGGCaaUGCAGCgGUGUUGACGGu- -3'
miRNA:   3'- aCUACCG--ACGUCGaCGCAGCUGCUgc -5'
24933 3' -56.4 NC_005284.1 + 6770 0.68 0.531998
Target:  5'- aUGAaGGCucagccguucaUGCGGCcggcguuugaUGCGUCGAuCGGCGa -3'
miRNA:   3'- -ACUaCCG-----------ACGUCG----------ACGCAGCU-GCUGC- -5'
24933 3' -56.4 NC_005284.1 + 8069 0.67 0.585762
Target:  5'- gGAUGGUUgGCGGCgGCuauucUCGgACGACGa -3'
miRNA:   3'- aCUACCGA-CGUCGaCGc----AGC-UGCUGC- -5'
24933 3' -56.4 NC_005284.1 + 13990 0.72 0.302589
Target:  5'- gUGAUGGC-GCGGCUGCG-CGGuaagcggggcgUGACGu -3'
miRNA:   3'- -ACUACCGaCGUCGACGCaGCU-----------GCUGC- -5'
24933 3' -56.4 NC_005284.1 + 14585 0.71 0.367093
Target:  5'- cGAUGGCUGCuGC-GCGUCgGAUGuCu -3'
miRNA:   3'- aCUACCGACGuCGaCGCAG-CUGCuGc -5'
24933 3' -56.4 NC_005284.1 + 16168 0.71 0.333701
Target:  5'- cUGAUggGGCU-CGGC-GCGUCGAUGGCGc -3'
miRNA:   3'- -ACUA--CCGAcGUCGaCGCAGCUGCUGC- -5'
24933 3' -56.4 NC_005284.1 + 17765 0.69 0.47003
Target:  5'- cGcUGGCUGCuGCUGaCGUCG-CGguACGa -3'
miRNA:   3'- aCuACCGACGuCGAC-GCAGCuGC--UGC- -5'
24933 3' -56.4 NC_005284.1 + 18065 0.7 0.430825
Target:  5'- cGGUGGCggGC-GCUGUGUgGAUGAuCGa -3'
miRNA:   3'- aCUACCGa-CGuCGACGCAgCUGCU-GC- -5'
24933 3' -56.4 NC_005284.1 + 18336 0.73 0.287891
Target:  5'- cGAcGGCgGCGGCUGCacCGAUGGCGg -3'
miRNA:   3'- aCUaCCGaCGUCGACGcaGCUGCUGC- -5'
24933 3' -56.4 NC_005284.1 + 21869 0.66 0.662369
Target:  5'- ---cGGCUGCcguGCaGUGUCGgacaGCGACGc -3'
miRNA:   3'- acuaCCGACGu--CGaCGCAGC----UGCUGC- -5'
24933 3' -56.4 NC_005284.1 + 22743 0.74 0.234701
Target:  5'- aGAUGGCcgaGCGGCUGCGgUCGAUcaaggGGCGc -3'
miRNA:   3'- aCUACCGa--CGUCGACGC-AGCUG-----CUGC- -5'
24933 3' -56.4 NC_005284.1 + 23194 1.1 0.000668
Target:  5'- gUGAUGGCUGCAGCUGCGUCGACGACGg -3'
miRNA:   3'- -ACUACCGACGUCGACGCAGCUGCUGC- -5'
24933 3' -56.4 NC_005284.1 + 23344 0.73 0.266905
Target:  5'- gUGAUGGCggaaaGCGGCgGCGUUGgcccuacgcACGACGa -3'
miRNA:   3'- -ACUACCGa----CGUCGaCGCAGC---------UGCUGC- -5'
24933 3' -56.4 NC_005284.1 + 23394 0.68 0.500591
Target:  5'- uUGAUGcaacGCAGUUcCGUCGACGACGc -3'
miRNA:   3'- -ACUACcga-CGUCGAcGCAGCUGCUGC- -5'
24933 3' -56.4 NC_005284.1 + 26402 0.69 0.450193
Target:  5'- -cGUGGCUGCGccGCUucgagGUGggCGACGACGa -3'
miRNA:   3'- acUACCGACGU--CGA-----CGCa-GCUGCUGC- -5'
24933 3' -56.4 NC_005284.1 + 26752 0.66 0.651429
Target:  5'- ----aGCUcgAGCUGCGUCGACGAg- -3'
miRNA:   3'- acuacCGAcgUCGACGCAGCUGCUgc -5'
24933 3' -56.4 NC_005284.1 + 29618 0.66 0.640472
Target:  5'- aUGAcGGCuccguuUGCGGCUGUGaCGACGuuGa -3'
miRNA:   3'- -ACUaCCG------ACGUCGACGCaGCUGCugC- -5'
24933 3' -56.4 NC_005284.1 + 31617 0.68 0.490303
Target:  5'- --uUGGgUGCgGGCgGCGUCGAgGGCGc -3'
miRNA:   3'- acuACCgACG-UCGaCGCAGCUgCUGC- -5'
24933 3' -56.4 NC_005284.1 + 31808 0.66 0.640472
Target:  5'- cGcUGGCUGCGGgaGCGagcaugguaugUCGAUG-CGg -3'
miRNA:   3'- aCuACCGACGUCgaCGC-----------AGCUGCuGC- -5'
24933 3' -56.4 NC_005284.1 + 32808 0.68 0.500591
Target:  5'- cGcgGGUUGCggGGCgGCGUCGguuACGGCa -3'
miRNA:   3'- aCuaCCGACG--UCGaCGCAGC---UGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.