Results 21 - 28 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 24933 | 3' | -56.4 | NC_005284.1 | + | 33461 | 0.67 | 0.596662 |
|
Target: 5'- gUGAUGGCgagccGuCGGCaGCGcCGGcCGACGa -3' miRNA: 3'- -ACUACCGa----C-GUCGaCGCaGCU-GCUGC- -5' |
|||||||
| 24933 | 3' | -56.4 | NC_005284.1 | + | 37109 | 0.7 | 0.421327 |
|
Target: 5'- aGgcGGCacuacaGCAGC-GCGUCGAgGACGa -3' miRNA: 3'- aCuaCCGa-----CGUCGaCGCAGCUgCUGC- -5' |
|||||||
| 24933 | 3' | -56.4 | NC_005284.1 | + | 43138 | 0.67 | 0.595571 |
|
Target: 5'- aGAUGGaUUGCAGgggacguCUGCGgugacaUUGACGACGc -3' miRNA: 3'- aCUACC-GACGUC-------GACGC------AGCUGCUGC- -5' |
|||||||
| 24933 | 3' | -56.4 | NC_005284.1 | + | 45967 | 0.76 | 0.170598 |
|
Target: 5'- cGAUGGC-GCAGCgugGCGUgGACGAg- -3' miRNA: 3'- aCUACCGaCGUCGa--CGCAgCUGCUgc -5' |
|||||||
| 24933 | 3' | -56.4 | NC_005284.1 | + | 47472 | 0.67 | 0.553325 |
|
Target: 5'- aGAUGGCUcGCAuGCUcGaCGUCGGCcACa -3' miRNA: 3'- aCUACCGA-CGU-CGA-C-GCAGCUGcUGc -5' |
|||||||
| 24933 | 3' | -56.4 | NC_005284.1 | + | 49325 | 0.68 | 0.542627 |
|
Target: 5'- cGAUGGUUGgcaCGGCacgcgUGCG-CGACGACc -3' miRNA: 3'- aCUACCGAC---GUCG-----ACGCaGCUGCUGc -5' |
|||||||
| 24933 | 3' | -56.4 | NC_005284.1 | + | 53578 | 0.66 | 0.65909 |
|
Target: 5'- cUGggGGCgUGCGGCUGUGgCGgucaucgaguucauGCGACu -3' miRNA: 3'- -ACuaCCG-ACGUCGACGCaGC--------------UGCUGc -5' |
|||||||
| 24933 | 3' | -56.4 | NC_005284.1 | + | 54684 | 0.67 | 0.585762 |
|
Target: 5'- aGAcGGCgcgcgaGCGGUUGCGgUGACGugGu -3' miRNA: 3'- aCUaCCGa-----CGUCGACGCaGCUGCugC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home