miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24933 5' -52.6 NC_005284.1 + 23508 0.66 0.837447
Target:  5'- cGCCGUGUaCG-GUGCGCGAGaauACa-- -3'
miRNA:   3'- -CGGCACA-GCuCGUGCGUUCgu-UGaua -5'
24933 5' -52.6 NC_005284.1 + 18839 0.66 0.837447
Target:  5'- gGCCGggcGUgcaggggcagcCGAGCACGgaucaAAGCGACUAc -3'
miRNA:   3'- -CGGCa--CA-----------GCUCGUGCg----UUCGUUGAUa -5'
24933 5' -52.6 NC_005284.1 + 24018 0.66 0.828221
Target:  5'- aGCCccgGUCGAGCGacCG-GGGCAACUGa -3'
miRNA:   3'- -CGGca-CAGCUCGU--GCgUUCGUUGAUa -5'
24933 5' -52.6 NC_005284.1 + 46570 0.66 0.828221
Target:  5'- uGCgGcGUCGGcCAUGCAcgAGCAGCUAa -3'
miRNA:   3'- -CGgCaCAGCUcGUGCGU--UCGUUGAUa -5'
24933 5' -52.6 NC_005284.1 + 19429 0.66 0.818776
Target:  5'- cGCCGUucGUUGuGCAagGCGGGCAAgUGUu -3'
miRNA:   3'- -CGGCA--CAGCuCGUg-CGUUCGUUgAUA- -5'
24933 5' -52.6 NC_005284.1 + 17997 0.66 0.818776
Target:  5'- cGCCuUGUCGAGCGugauccuuuCGCcAGCcGCUGc -3'
miRNA:   3'- -CGGcACAGCUCGU---------GCGuUCGuUGAUa -5'
24933 5' -52.6 NC_005284.1 + 5255 0.66 0.809121
Target:  5'- uGCCG-GUCGuugaaACGCAGGCGAUg-- -3'
miRNA:   3'- -CGGCaCAGCucg--UGCGUUCGUUGaua -5'
24933 5' -52.6 NC_005284.1 + 8964 0.66 0.809121
Target:  5'- uGCCGUGguc-GCGCGCGAugcGCAGCa-- -3'
miRNA:   3'- -CGGCACagcuCGUGCGUU---CGUUGaua -5'
24933 5' -52.6 NC_005284.1 + 54662 0.66 0.797277
Target:  5'- uGCCGUGacugucacgcggCGAagacgGCGCGCGAGCggUUGc -3'
miRNA:   3'- -CGGCACa-----------GCU-----CGUGCGUUCGuuGAUa -5'
24933 5' -52.6 NC_005284.1 + 6579 0.67 0.789232
Target:  5'- uCCGUGaCGAgGCGCGUAAGCGcGCg-- -3'
miRNA:   3'- cGGCACaGCU-CGUGCGUUCGU-UGaua -5'
24933 5' -52.6 NC_005284.1 + 12300 0.67 0.77799
Target:  5'- aGCCGgg-CGuGCGCGCAcaccuugAGCGAUUGa -3'
miRNA:   3'- -CGGCacaGCuCGUGCGU-------UCGUUGAUa -5'
24933 5' -52.6 NC_005284.1 + 9460 0.67 0.768647
Target:  5'- uGCCGUGUacuuUGGGCAaucCGCAgucgcGGCGACg-- -3'
miRNA:   3'- -CGGCACA----GCUCGU---GCGU-----UCGUUGaua -5'
24933 5' -52.6 NC_005284.1 + 5455 0.67 0.768647
Target:  5'- aCCGgugcauuaGUCGAGCAaGCcGGCGGCUGa -3'
miRNA:   3'- cGGCa-------CAGCUCGUgCGuUCGUUGAUa -5'
24933 5' -52.6 NC_005284.1 + 8323 0.67 0.747464
Target:  5'- cGUCuUGcCGAGCcgcaGCGCGAGCGACa-- -3'
miRNA:   3'- -CGGcACaGCUCG----UGCGUUCGUUGaua -5'
24933 5' -52.6 NC_005284.1 + 39753 0.68 0.741007
Target:  5'- cGCU-UGUCGAGCACcuguugcgcgaaguuGCAAGCGAuCUGa -3'
miRNA:   3'- -CGGcACAGCUCGUG---------------CGUUCGUU-GAUa -5'
24933 5' -52.6 NC_005284.1 + 12208 0.68 0.736679
Target:  5'- gGCgGUGUggggacCGGGCACGUccacGAGCGACa-- -3'
miRNA:   3'- -CGgCACA------GCUCGUGCG----UUCGUUGaua -5'
24933 5' -52.6 NC_005284.1 + 11389 0.68 0.703704
Target:  5'- uGCCGgauguUGUCGAGCAUGCGcucgcuuuccAGCGAa--- -3'
miRNA:   3'- -CGGC-----ACAGCUCGUGCGU----------UCGUUgaua -5'
24933 5' -52.6 NC_005284.1 + 7067 0.68 0.703704
Target:  5'- cGCCaUGUCGAGCGCGC---CAugUAc -3'
miRNA:   3'- -CGGcACAGCUCGUGCGuucGUugAUa -5'
24933 5' -52.6 NC_005284.1 + 21241 0.68 0.692547
Target:  5'- aGCCGuUGcUCGAGC-CGCGcGCGGCa-- -3'
miRNA:   3'- -CGGC-AC-AGCUCGuGCGUuCGUUGaua -5'
24933 5' -52.6 NC_005284.1 + 45207 0.69 0.67006
Target:  5'- gGCCGUGUCGAacgGCACGagauCGAGCGc---- -3'
miRNA:   3'- -CGGCACAGCU---CGUGC----GUUCGUugaua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.